Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   EQM13_RS11840 Genome accession   NZ_CP035282
Coordinates   2449785..2450480 (+) Length   231 a.a.
NCBI ID   WP_114219889.1    Uniprot ID   -
Organism   Acidilutibacter cellobiosedens strain JN-28     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2444785..2455480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQM13_RS11815 (EQM13_11815) - 2445229..2446242 (-) 1014 WP_128752756.1 HAMP domain-containing sensor histidine kinase -
  EQM13_RS11820 (EQM13_11820) - 2446239..2446904 (-) 666 WP_128752758.1 response regulator transcription factor -
  EQM13_RS11825 (EQM13_11825) - 2447092..2447874 (-) 783 WP_128752760.1 ABC transporter permease -
  EQM13_RS11830 (EQM13_11830) - 2447876..2448682 (-) 807 WP_128752761.1 ABC transporter permease -
  EQM13_RS11835 (EQM13_11835) - 2448675..2449598 (-) 924 WP_128752763.1 ABC transporter ATP-binding protein -
  EQM13_RS11840 (EQM13_11840) scnR 2449785..2450480 (+) 696 WP_114219889.1 response regulator transcription factor Regulator
  EQM13_RS11845 (EQM13_11845) - 2450477..2451847 (+) 1371 WP_128752764.1 sensor histidine kinase KdpD -
  EQM13_RS11850 (EQM13_11850) - 2451860..2453062 (-) 1203 WP_128752766.1 hypothetical protein -
  EQM13_RS11855 (EQM13_11855) eis 2453525..2454736 (+) 1212 WP_071141379.1 enhanced intracellular survival protein Eis -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25935.63 Da        Isoelectric Point: 8.4464

>NTDB_id=338897 EQM13_RS11840 WP_114219889.1 2449785..2450480(+) (scnR) [Acidilutibacter cellobiosedens strain JN-28]
MKDSSILVIDDELELLTMIRSIFERAGFTQITTAASGKEALEVLKQKMPAMVILDVMLPDIDGFTLLKEIRKVSKVPVLM
LTAKGEAEDRFSGFELGADDYVVKPFLPKELLLRVQAILKRTYPRGNRIVILPAAEVDLDKAEVHRFGKTIPLTAKEYNI
FLKLSENAGRIVTIGALCQTVCGEIWQGYETTLMTHIRHLREKIEKNPSAPEALITIKGLGYKLVLKEVQR

Nucleotide


Download         Length: 696 bp        

>NTDB_id=338897 EQM13_RS11840 WP_114219889.1 2449785..2450480(+) (scnR) [Acidilutibacter cellobiosedens strain JN-28]
ATGAAGGACAGTTCGATTTTAGTTATAGATGATGAGTTGGAACTATTGACCATGATAAGGTCAATTTTTGAACGGGCAGG
TTTTACACAGATTACAACTGCAGCATCAGGTAAAGAGGCCCTTGAAGTACTTAAGCAAAAAATGCCTGCTATGGTTATAT
TGGATGTGATGCTGCCTGATATTGATGGTTTTACATTACTGAAAGAAATACGAAAAGTCAGCAAAGTTCCCGTTTTAATG
CTTACAGCAAAAGGAGAAGCCGAAGACAGGTTTTCAGGTTTTGAATTAGGTGCAGATGACTACGTAGTAAAACCTTTTCT
GCCAAAGGAGCTCTTACTCCGAGTTCAGGCAATATTAAAGCGAACATATCCGAGAGGTAACCGTATTGTTATTCTCCCGG
CAGCAGAGGTAGATTTGGATAAAGCAGAAGTGCACCGTTTTGGTAAAACTATTCCTTTGACGGCAAAAGAATATAATATT
TTTCTGAAGCTTTCAGAAAATGCCGGCCGTATCGTAACAATAGGCGCACTGTGCCAAACCGTTTGCGGGGAAATATGGCA
GGGTTATGAAACAACATTGATGACTCACATTCGTCATCTTCGAGAAAAAATAGAAAAAAATCCTTCTGCTCCCGAAGCCC
TTATAACGATAAAGGGATTAGGGTATAAACTTGTTTTGAAGGAGGTACAACGGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.121

96.537

0.494
  micA Streptococcus pneumoniae Cp1015

39.035

98.701

0.385
  vicR Streptococcus mutans UA159

37.555

99.134

0.372

Multiple sequence alignment