Detailed information NTG0033864

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SSUST3_RS00340
• Genome accession: NC_015433
• Coordinates: 58636..59637 (+)
• Length: 333 a.a.
• NCBI ID: WP_013730058.1
• Uniprot ID: -
• Organism: Streptococcus suis ST3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 53636..64637

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSUST3_RS00315 (SSUST3_0048)	-	53689..54267 (+)	579	WP_002935308.1	CPBP family intramembrane glutamic endopeptidase	-
SSUST3_RS00320 (SSUST3_0049)	-	54282..54710 (+)	429	WP_002935307.1	Msa family membrane protein	-
SSUST3_RS00325 (SSUST3_0050)	-	54703..55575 (+)	873	WP_002935305.1	ABC transporter ATP-binding protein	-
SSUST3_RS00330 (SSUST3_0051)	-	55581..56351 (+)	771	WP_002935304.1	membrane protein	-
SSUST3_RS00335 (SSUST3_0052)	-	56354..58066 (+)	1713	Protein_47	ABC transporter ATP-binding protein	-
SSUST3_RS10675 (SSUST3_0053)	-	58168..58341 (+)	174	WP_002935301.1	hypothetical protein	-
SSUST3_RS00340 (SSUST3_0054)	ruvB	58636..59637 (+)	1002	WP_013730058.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SSUST3_RS00345 (SSUST3_0055)	-	59637..60383 (+)	747	WP_002935299.1	GNAT family N-acetyltransferase	-
SSUST3_RS00350 (SSUST3_0056)	-	60385..61023 (+)	639	WP_002935298.1	HAD-IA family hydrolase	-
SSUST3_RS00355 (SSUST3_0057)	comR	61270..62187 (+)	918	WP_002935296.1	helix-turn-helix domain-containing protein	Regulator
SSUST3_RS00360 (SSUST3_0058)	-	62452..63693 (+)	1242	WP_013730059.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37610.12 Da
• Isoelectric Point: 4.4673

>NTDB_id=33864 SSUST3_RS00340 WP_013730058.1 58636..59637(+) (ruvB) [Streptococcus suis ST3]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEAGRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDNITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=33864 SSUST3_RS00340 WP_013730058.1 58636..59637(+) (ruvB) [Streptococcus suis ST3]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGATAAGGTCAAGGACCAGCTCAAAATCTTTATCGAGGCGGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTTTTTGGCCCACCGGGTCTGGGGAAGACCACCATGGCCTTTGTCATTGCCAACGAATTGGGCGTCAAT
ATCAAGCAGACCAGTGGTCCTGTTATTGAAAAAGCGGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAGGATTTCTACATCG
ACATTATGATTGGAGCAGGGGAGGCCGGTCGCTCCGTGCATTTGGAGTTGCCACCGTTTACCCTGATTGGAGCAACCACT
CGTGCGGGTATGCTATCCAATCCTCTGCGGGCCCGTTTTGGTATTACCGGTCATATGGAGTATTATGAACTGGCTGATTT
GACGGAGATTGTCGAGCGAACAGCGGACATCTTTGACATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGCTTGCTCAAGCGGGTGCGGGATTTCGCACAGATTATGGGAGACGGCCTGATT
GATGATAACATTACGGACAAGGCCCTGACCATGCTGGATGTGGACCGCGAGGGGCTGGACTACGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGCGGCGGTCCCGTCGGCCTCAACACTCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACACGGACGGGGCGGGTTGCGACAGCC
AAGGCTTACGAACACCTGGGCTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae R6	89.728	99.399	0.892
ruvB	Streptococcus pneumoniae D39	89.728	99.399	0.892
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.898	0.574
ruvB	Helicobacter pylori 26695	51.368	98.799	0.508
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474