Detailed information NTG0338632

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: F1538_RS05125
• Genome accession: NZ_CP043771
• Coordinates: 1029633..1030298 (+)
• Length: 221 a.a.
• NCBI ID: WP_013526173.1
• Uniprot ID: Q4QLV5
• Organism: Haemophilus influenzae biotype aegyptius strain HE15/F3028
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1024633..1035298

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F1538_RS10180	-	1025162..1025329 (-)	168	WP_158305134.1	hypothetical protein	-
F1538_RS05095 (F1538_05105)	rumB	1025374..1025808 (+)	435	Protein_996	23S rRNA (uracil(747)-C(5))-methyltransferase	-
F1538_RS05100 (F1538_05110)	crp	1026173..1026847 (-)	675	WP_005647998.1	cAMP-activated global transcriptional regulator CRP	Regulator
F1538_RS05105 (F1538_05115)	-	1026832..1027083 (-)	252	WP_005647999.1	YheU family protein	-
F1538_RS05110 (F1538_05120)	slmA	1027105..1027761 (-)	657	WP_005648000.1	nucleoid occlusion factor SlmA	-
F1538_RS05115 (F1538_05125)	dut	1027765..1028220 (-)	456	WP_005631431.1	dUTP diphosphatase	-
F1538_RS05120 (F1538_05130)	coaBC	1028268..1029470 (-)	1203	WP_011272308.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
F1538_RS05125 (F1538_05135)	radC	1029633..1030298 (+)	666	WP_013526173.1	DNA repair protein RadC	Machinery gene
F1538_RS05130 (F1538_05140)	rpmB	1030512..1030748 (+)	237	WP_005542826.1	50S ribosomal protein L28	-
F1538_RS05135 (F1538_05145)	rpmG	1030760..1030930 (+)	171	WP_005613503.1	50S ribosomal protein L33	-
F1538_RS05140 (F1538_05150)	-	1031278..1032642 (+)	1365	WP_013526174.1	diaminobutyrate--2-oxoglutarate transaminase	-
F1538_RS05145 (F1538_05155)	ddc	1032833..1034368 (+)	1536	WP_013526175.1	L-2,4-diaminobutyrate decarboxylase	-

Sequence

Protein

• Length: 221 a.a.
• Molecular weight: 25057.34 Da
• Isoelectric Point: 6.3797

>NTDB_id=338632 F1538_RS05125 WP_013526173.1 1029633..1030298(+) (radC) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKDCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQEMLSTPIINDLETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide

• Length: 666 bp

>NTDB_id=338632 F1538_RS05125 WP_013526173.1 1029633..1030298(+) (radC) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGATTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGAGATGTTAAGTACGCCGATTATTAATGATCTTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAACTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (102-218)

• UPF0758 N-terminal (UPF0758_N) (8-74)

3D structure

• AlphaFold DB: Q4QLV5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	97.738	100	0.977
radC	Streptococcus pneumoniae TIGR4	38.14	97.285	0.371
radC	Streptococcus pneumoniae R6	37.674	97.285	0.367
radC	Streptococcus pneumoniae D39	37.674	97.285	0.367