Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   FZN58_RS03180 Genome accession   NZ_CP043763
Coordinates   602706..603089 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BfR-CA-14430     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 597706..608089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZN58_RS03160 (FZN58_03160) - 597785..599719 (-) 1935 WP_010891871.1 ribonuclease R family protein -
  FZN58_RS03165 (FZN58_03165) ilvC 599838..600860 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  FZN58_RS03170 (FZN58_03170) - 600864..601946 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  FZN58_RS03175 (FZN58_03175) dprA 601936..602709 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  FZN58_RS03180 (FZN58_03180) dprB 602706..603089 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  FZN58_RS03185 (FZN58_03185) - 603118..603957 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FZN58_RS03190 (FZN58_03190) msrA 604133..604630 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  FZN58_RS03195 (FZN58_03195) ppa 604671..605189 (-) 519 WP_032584152.1 inorganic diphosphatase -
  FZN58_RS03200 (FZN58_03200) adk 605199..605777 (-) 579 WP_002859580.1 adenylate kinase -
  FZN58_RS03205 (FZN58_03205) aspS 605774..607525 (-) 1752 WP_032584150.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=338512 FZN58_RS03180 WP_002858579.1 602706..603089(+) (dprB) [Campylobacter jejuni strain BfR-CA-14430]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=338512 FZN58_RS03180 WP_002858579.1 602706..603089(+) (dprB) [Campylobacter jejuni strain BfR-CA-14430]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment