Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F1D59_RS09845 Genome accession   NZ_CP043638
Coordinates   2301599..2303230 (-) Length   543 a.a.
NCBI ID   WP_053611761.1    Uniprot ID   -
Organism   Streptomyces sp. INR7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2296599..2308230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1D59_RS09820 (F1D59_09870) rpsB 2297121..2298008 (-) 888 WP_030650993.1 30S ribosomal protein S2 -
  F1D59_RS09825 (F1D59_09875) - 2298260..2298817 (+) 558 WP_051734602.1 M23 family metallopeptidase -
  F1D59_RS09830 (F1D59_09880) - 2298771..2299328 (-) 558 WP_030650987.1 TetR/AcrR family transcriptional regulator -
  F1D59_RS09835 (F1D59_09885) whiG 2299381..2300217 (-) 837 WP_045936347.1 RNA polymerase sigma factor WhiG -
  F1D59_RS09840 (F1D59_09890) dprA 2300478..2301602 (-) 1125 WP_051734599.1 DNA-processing protein DprA -
  F1D59_RS09845 (F1D59_09895) comM 2301599..2303230 (-) 1632 WP_053611761.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F1D59_RS09850 (F1D59_09900) - 2303230..2303601 (-) 372 WP_030650962.1 YraN family protein -
  F1D59_RS09855 (F1D59_09905) - 2303710..2304018 (-) 309 WP_005311352.1 DUF2469 domain-containing protein -
  F1D59_RS09860 (F1D59_09910) - 2304074..2304580 (-) 507 WP_030650957.1 NUDIX hydrolase -
  F1D59_RS09865 (F1D59_09915) lepB 2304570..2305349 (-) 780 WP_030650954.1 signal peptidase I -
  F1D59_RS09870 (F1D59_09920) lepB 2305391..2306287 (-) 897 WP_030650951.1 signal peptidase I -
  F1D59_RS09875 (F1D59_09925) lepB 2306196..2307353 (-) 1158 Protein_1965 signal peptidase I -
  F1D59_RS09880 (F1D59_09930) lepB 2307346..2308098 (-) 753 WP_037695096.1 signal peptidase I -

Sequence

Protein


Download         Length: 543 a.a.        Molecular weight: 56235.69 Da        Isoelectric Point: 7.2406

>NTDB_id=338440 F1D59_RS09845 WP_053611761.1 2301599..2303230(-) (comM) [Streptomyces sp. INR7]
MGFARACSVALVGVDGVVVEVQADLEPGVAAFTLVGLPDKTLVESRDRVRAAVVNSGAAWPQKKLTVGLSPASVPKSGAG
FDLAVAAAVLGAAEVVDPAAIADLVLIGELGLDGRVRPVRGILPAVLAAAEAGYRQVVVPRQCAAEAALVPDVSVLGVRS
LRQLIAVLTDGVVPEEEPGDPPGRPDPMLAGLLVPGAGLGTGLAPGRPDGDGTDFPDLADVTGQHTARRALEVAAAGGHH
LFLSGPPGAGKTMLAERLPWLLPPLTRQDSVEVTAVHSVAGILPPGEPLVSRPPYCAPHHSATMQSLVGGGTGVPRPGAV
SLAHRGVLFLDEAAEFHSRALDALRQPLESGHVVIARAAGVVRLPARFLMVLAANPCPCGRHTLHGAGCECPPSVIRRYQ
ARLSGPLLDRVDLRVEVEPVTRSDLLGRGGRGESTAVVADRVREARERAGARLAGTAWRLNSEVPGQELRTRWQPAPGAL
AQAERELERGLLTARGLDRVLRVAWTVADLRGRDRPEALDVAVALELRTGIARGAMSVPGAGT

Nucleotide


Download         Length: 1632 bp        

>NTDB_id=338440 F1D59_RS09845 WP_053611761.1 2301599..2303230(-) (comM) [Streptomyces sp. INR7]
ATGGGGTTCGCGCGAGCGTGCTCCGTGGCCCTGGTCGGCGTCGACGGCGTGGTGGTCGAGGTCCAGGCCGACCTGGAGCC
CGGAGTCGCGGCCTTCACCCTGGTGGGGCTGCCGGACAAGACCCTGGTCGAGAGCCGGGACCGGGTGCGTGCGGCCGTGG
TCAATTCGGGAGCGGCCTGGCCGCAGAAGAAGCTCACGGTCGGGCTGAGCCCGGCCTCCGTACCGAAGTCCGGTGCCGGA
TTCGACCTCGCCGTCGCGGCGGCCGTGCTCGGGGCGGCCGAGGTGGTCGACCCGGCGGCCATCGCCGACCTCGTGCTGAT
CGGCGAGCTGGGGCTGGACGGGCGGGTGCGTCCGGTGCGGGGGATCCTGCCGGCCGTCCTCGCCGCGGCCGAGGCCGGCT
ACCGGCAGGTGGTCGTCCCCCGGCAGTGCGCCGCGGAGGCCGCGCTGGTACCGGACGTCTCGGTGCTCGGCGTGCGCAGC
CTGCGCCAGCTGATCGCCGTCCTGACCGACGGGGTGGTGCCCGAGGAGGAGCCCGGGGACCCGCCGGGCCGCCCGGACCC
GATGCTGGCCGGACTGCTCGTCCCGGGTGCGGGCCTGGGCACGGGTCTCGCACCCGGCCGCCCCGACGGGGACGGCACGG
ACTTTCCCGACCTCGCCGACGTGACCGGGCAGCACACGGCCCGCCGCGCCCTCGAAGTGGCCGCCGCCGGGGGCCACCAC
CTGTTCCTCAGCGGGCCCCCGGGCGCCGGGAAGACGATGCTGGCCGAGCGGCTGCCCTGGCTCCTGCCGCCACTCACCCG
CCAGGACTCCGTGGAGGTCACCGCGGTCCACTCGGTCGCGGGAATCCTGCCGCCCGGCGAACCCCTGGTCTCCCGGCCGC
CCTACTGCGCCCCGCACCACTCGGCGACCATGCAGTCCCTCGTGGGCGGCGGTACCGGAGTGCCCAGGCCCGGAGCGGTC
TCCCTGGCCCATCGGGGGGTGCTCTTCCTGGACGAGGCCGCGGAGTTCCACAGCCGGGCGCTCGACGCGCTGCGCCAGCC
CCTGGAATCGGGGCACGTGGTCATCGCCCGCGCCGCCGGCGTGGTGCGGCTGCCCGCCAGGTTCCTGATGGTCCTCGCCG
CCAACCCCTGCCCGTGCGGACGGCACACCCTGCACGGCGCGGGATGCGAATGCCCGCCCTCGGTGATCCGGCGCTACCAG
GCCCGGCTGTCCGGACCGCTGCTGGACCGGGTGGACCTGAGGGTGGAGGTCGAGCCCGTGACCCGCAGCGACCTGCTGGG
CCGCGGCGGCCGGGGAGAGTCCACCGCGGTGGTCGCCGACCGGGTCCGGGAGGCCCGGGAGCGCGCCGGGGCCCGGCTCG
CCGGCACGGCATGGCGGCTCAACTCGGAAGTCCCCGGACAGGAACTGAGGACCCGTTGGCAGCCGGCACCGGGGGCGCTG
GCGCAGGCCGAGCGGGAACTGGAGCGGGGACTGCTCACCGCGCGCGGGCTGGACCGGGTCCTGCGCGTCGCCTGGACCGT
CGCCGACCTGCGGGGACGGGACCGGCCCGAGGCGCTGGACGTGGCCGTGGCGCTGGAGCTGCGGACCGGTATCGCCCGTG
GCGCCATGTCGGTTCCGGGGGCCGGGACATGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(217-423)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(432-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

40

98.527

0.394
  comM Vibrio cholerae O1 biovar El Tor strain E7946

41.634

94.659

0.394
  comM Vibrio cholerae strain A1552

41.634

94.659

0.394
  comM Acinetobacter baylyi ADP1

38.505

98.527

0.379
  comM Haemophilus influenzae Rd KW20

39.029

94.843

0.37
  comM Glaesserella parasuis strain SC1401

37.429

97.422

0.365

Multiple sequence alignment