Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | F0316_RS11905 | Genome accession | NZ_CP043554 |
| Coordinates | 2554555..2555091 (-) | Length | 178 a.a. |
| NCBI ID | WP_001887866.1 | Uniprot ID | A0AAU8WJ70 |
| Organism | Vibrio cholerae strain RFB16 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2549555..2560091
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F0316_RS11885 (F0316_11885) | - | 2550010..2550327 (-) | 318 | WP_000252812.1 | MSHA biogenesis protein MshK | - |
| F0316_RS11890 (F0316_11890) | gspM | 2550320..2550970 (-) | 651 | WP_000835144.1 | type II secretion system protein GspM | - |
| F0316_RS11895 (F0316_11895) | - | 2550967..2552406 (-) | 1440 | WP_000743255.1 | PilN domain-containing protein | - |
| F0316_RS11900 (F0316_11900) | csrD | 2552419..2554431 (-) | 2013 | WP_172626023.1 | RNase E specificity factor CsrD | - |
| F0316_RS11905 (F0316_11905) | ssb | 2554555..2555091 (-) | 537 | WP_001887866.1 | single-stranded DNA-binding protein | Machinery gene |
| F0316_RS11910 (F0316_11910) | qstR | 2555383..2556027 (+) | 645 | WP_114728798.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| F0316_RS11915 (F0316_11915) | galU | 2556200..2557072 (+) | 873 | WP_001920788.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| F0316_RS11920 (F0316_11920) | uvrA | 2557228..2560050 (+) | 2823 | WP_057563367.1 | excinuclease ABC subunit UvrA | Machinery gene |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 20012.21 Da Isoelectric Point: 5.2581
>NTDB_id=338408 F0316_RS11905 WP_001887866.1 2554555..2555091(-) (ssb) [Vibrio cholerae strain RFB16]
MASRGVNKVILIGNLGQDPEVRYMPSGDAMVNLTVATSETWRDKATGEQKEKTEWHRVSVFGKTAEFIGEYARKGTQVYV
DGQLQTRKWQDQQGQERYTTEVVVRWPAGEVQIMGSRPQQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQY
SQPQYNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPSGDAMVNLTVATSETWRDKATGEQKEKTEWHRVSVFGKTAEFIGEYARKGTQVYV
DGQLQTRKWQDQQGQERYTTEVVVRWPAGEVQIMGSRPQQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQY
SQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=338408 F0316_RS11905 WP_001887866.1 2554555..2555091(-) (ssb) [Vibrio cholerae strain RFB16]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGATGCGATGGTGAATTTAACTGTTGCAACCTCCGAAACTTGGCGTGATAAAGCCACTGGTGAGCAAAAGGAAAAAACCG
AATGGCATAGAGTGTCTGTTTTCGGTAAAACCGCTGAATTCATTGGTGAATATGCGCGTAAGGGAACCCAAGTTTATGTT
GATGGGCAACTGCAAACGCGCAAGTGGCAAGACCAGCAAGGGCAAGAGCGTTATACGACGGAAGTGGTTGTGCGTTGGCC
TGCGGGTGAAGTGCAAATTATGGGCAGTCGTCCTCAACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCACCAG
CGCAGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTAC
TCGCAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGATGCGATGGTGAATTTAACTGTTGCAACCTCCGAAACTTGGCGTGATAAAGCCACTGGTGAGCAAAAGGAAAAAACCG
AATGGCATAGAGTGTCTGTTTTCGGTAAAACCGCTGAATTCATTGGTGAATATGCGCGTAAGGGAACCCAAGTTTATGTT
GATGGGCAACTGCAAACGCGCAAGTGGCAAGACCAGCAAGGGCAAGAGCGTTATACGACGGAAGTGGTTGTGCGTTGGCC
TGCGGGTGAAGTGCAAATTATGGGCAGTCGTCCTCAACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCACCAG
CGCAGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTAC
TCGCAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
83.146 |
100 |
0.831 |
| ssb | Glaesserella parasuis strain SC1401 |
50.273 |
100 |
0.517 |
| ssb | Neisseria meningitidis MC58 |
43.889 |
100 |
0.444 |
| ssb | Neisseria gonorrhoeae MS11 |
43.889 |
100 |
0.444 |