Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   SOR_RS10275 Genome accession   NC_015291
Coordinates   19967..20203 (+) Length   78 a.a.
NCBI ID   WP_000939510.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 14967..25203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS10275 comW 19967..20203 (+) 237 WP_000939510.1 sigma(X)-activator ComW Regulator
  SOR_RS00105 (SOR_0021) - 20445..21731 (+) 1287 WP_041170825.1 adenylosuccinate synthase -
  SOR_RS00110 (SOR_0023) tadA 21932..22399 (+) 468 WP_001110104.1 tRNA adenosine(34) deaminase TadA -
  SOR_RS00115 (SOR_0025) - 22585..23028 (+) 444 WP_000701997.1 dUTP diphosphatase -
  SOR_RS00120 (SOR_0026) - 22988..23545 (+) 558 WP_000742055.1 histidine phosphatase family protein -
  SOR_RS00125 (SOR_0027) radA 23583..24920 (+) 1338 WP_000336573.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9496.06 Da        Isoelectric Point: 9.3157

>NTDB_id=33774 SOR_RS10275 WP_000939510.1 19967..20203(+) (comW) [Streptococcus oralis Uo5]
MLQKFYDRAFVFLKLVEQEYASLGQSCSEWESLHLRFLLYYLIRFKIKSDRDFSLYHFRAAYRLYLDKLLQGGTTLIQ

Nucleotide


Download         Length: 237 bp        

>NTDB_id=33774 SOR_RS10275 WP_000939510.1 19967..20203(+) (comW) [Streptococcus oralis Uo5]
ATGCTTCAGAAATTTTATGATCGAGCATTTGTCTTTTTGAAACTAGTTGAACAAGAATATGCCTCTTTAGGCCAGAGTTG
TTCAGAGTGGGAATCACTTCATCTCCGTTTTTTACTATATTACTTAATCCGATTTAAAATTAAAAGTGATAGGGACTTTT
CTCTATATCACTTTAGAGCAGCTTATCGTCTATATCTAGATAAATTACTGCAAGGTGGTACAACTCTCATCCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis NCTC 12261

48.571

89.744

0.436
  comW Streptococcus mitis SK321

48.571

89.744

0.436
  comW Streptococcus pneumoniae Rx1

45.714

89.744

0.41
  comW Streptococcus pneumoniae D39

45.714

89.744

0.41
  comW Streptococcus pneumoniae R6

45.714

89.744

0.41
  comW Streptococcus pneumoniae TIGR4

45.714

89.744

0.41

Multiple sequence alignment