Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AVIN_RS03070 Genome accession   NC_012560
Coordinates   625112..625615 (+) Length   167 a.a.
NCBI ID   WP_012699330.1    Uniprot ID   -
Organism   Azotobacter vinelandii DJ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 620112..630615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVIN_RS03060 (Avin_06520) uvrA 620747..623581 (-) 2835 WP_012699328.1 excinuclease ABC subunit UvrA -
  AVIN_RS03065 (Avin_06530) - 623714..625102 (+) 1389 WP_012699329.1 MFS transporter -
  AVIN_RS03070 (Avin_06540) ssb 625112..625615 (+) 504 WP_012699330.1 single-stranded DNA-binding protein Machinery gene
  AVIN_RS03075 (Avin_06550) - 625687..626586 (-) 900 WP_012699331.1 LysR family transcriptional regulator -
  AVIN_RS03080 (Avin_06560) - 626718..627455 (+) 738 WP_012699332.1 SDR family oxidoreductase -
  AVIN_RS03085 (Avin_06570) - 627937..628821 (+) 885 WP_041806899.1 sugar nucleotide-binding protein -
  AVIN_RS03090 (Avin_06580) - 628814..629752 (+) 939 WP_012699334.1 NAD-dependent epimerase/dehydratase family protein -
  AVIN_RS03095 (Avin_06590) - 629890..630564 (-) 675 WP_012699335.1 OmpW family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18657.61 Da        Isoelectric Point: 5.2852

>NTDB_id=33763 AVIN_RS03070 WP_012699330.1 625112..625615(+) (ssb) [Azotobacter vinelandii DJ]
MARGVNKVILIGNVGGDPETRYLPNGNAVTNITLATTDSWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQCYVE
GRLQTRKWQGQDGQDRYTTEIVVDMNGTLQLLGGRAGNPDDAPRAPRPPREPQQQAQAPQSRPAPAPQQDRQPPAPDYDS
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=33763 AVIN_RS03070 WP_012699330.1 625112..625615(+) (ssb) [Azotobacter vinelandii DJ]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGATCGGCAACGTCGGCGGCGATCCGGAAACCCGGTACCTGCCCAACGGCAA
CGCGGTCACCAACATCACCCTGGCCACCACCGACAGTTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGTACCGAAT
GGCATCGCGTGGTGTTCTTCGGCCGGCTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGTGCTACGTCGAG
GGCCGCCTGCAGACCCGCAAGTGGCAGGGGCAGGATGGCCAGGATCGCTATACCACAGAGATCGTCGTCGACATGAACGG
CACCTTGCAACTGCTCGGCGGCCGCGCCGGCAACCCCGACGACGCACCGCGCGCGCCGCGTCCCCCGCGCGAGCCGCAGC
AGCAGGCCCAGGCTCCGCAGTCGCGCCCCGCTCCCGCTCCGCAGCAGGACCGGCAGCCGCCAGCGCCGGACTACGACAGC
TTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.091

100

0.623
  ssb Glaesserella parasuis strain SC1401

47.826

100

0.527
  ssb Neisseria gonorrhoeae MS11

42.935

100

0.473
  ssb Neisseria meningitidis MC58

44.886

100

0.473

Multiple sequence alignment