Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   EQH32_RS08985 Genome accession   NZ_CP035248
Coordinates   1748287..1749108 (-) Length   273 a.a.
NCBI ID   WP_000601685.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901939     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1743287..1754108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH32_RS08940 (EQH32_09410) - 1743831..1744148 (-) 318 WP_000615767.1 thioredoxin family protein -
  EQH32_RS08945 (EQH32_09415) - 1744145..1744444 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  EQH32_RS08950 - 1744642..1744704 (-) 63 WP_219300018.1 hypothetical protein -
  EQH32_RS08955 (EQH32_09425) - 1744729..1744920 (-) 192 WP_001843938.1 cell wall-binding repeat protein -
  EQH32_RS08960 (EQH32_09430) - 1745081..1745755 (-) 675 WP_000725748.1 LiaF transmembrane domain-containing protein -
  EQH32_RS08965 (EQH32_09435) - 1745761..1746207 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  EQH32_RS08970 (EQH32_09440) - 1746321..1746824 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  EQH32_RS08975 (EQH32_09445) - 1746821..1747183 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  EQH32_RS08980 rcrQ 1747249..1748280 (-) 1032 WP_000506434.1 ABC transporter ATP-binding protein Regulator
  EQH32_RS08985 rcrP 1748287..1749108 (-) 822 WP_000601685.1 ABC transporter permease Regulator
  EQH32_RS08990 (EQH32_09455) - 1749125..1749596 (-) 472 Protein_1776 MarR family winged helix-turn-helix transcriptional regulator -
  EQH32_RS08995 (EQH32_09465) - 1749720..1750436 (-) 717 WP_000532880.1 YebC/PmpR family DNA-binding transcriptional regulator -
  EQH32_RS09000 (EQH32_09475) ply 1751317..1752732 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  EQH32_RS09005 (EQH32_09480) - 1752743..1753153 (-) 411 WP_000595758.1 hypothetical protein -
  EQH32_RS09010 (EQH32_09485) - 1753146..1753754 (-) 609 WP_000083614.1 hypothetical protein -

Sequence


Protein


Download         Length: 273 a.a.        Molecular weight: 30582.26 Da        Isoelectric Point: 6.9793

>NTDB_id=337612 EQH32_RS08985 WP_000601685.1 1748287..1749108(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901939]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMMGMPFLAFLSVVAVGFFASRVAAFYISRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWAVLVAVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=337612 EQH32_RS08985 WP_000601685.1 1748287..1749108(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901939]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGCCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTTTTATATTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGCTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTG
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

57.193

100

0.597


Multiple sequence alignment