Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SOR_RS08830 Genome accession   NC_015291
Coordinates   1771546..1772139 (-) Length   197 a.a.
NCBI ID   WP_000273401.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1766546..1777139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS08795 (SOR_1805) - 1767177..1768121 (+) 945 WP_000815617.1 magnesium transporter CorA family protein -
  SOR_RS08800 (SOR_1806) - 1768133..1768810 (+) 678 WP_000077998.1 DUF1129 domain-containing protein -
  SOR_RS08805 (SOR_1807) - 1768826..1769173 (+) 348 WP_000331823.1 TfoX/Sxy family protein -
  SOR_RS08815 (SOR_1808) - 1769486..1770520 (+) 1035 WP_000255139.1 S66 peptidase family protein -
  SOR_RS08820 (SOR_1809) - 1770626..1770889 (+) 264 WP_000166112.1 SemiSWEET family transporter -
  SOR_RS08825 (SOR_1810) - 1770970..1771536 (-) 567 WP_001126061.1 DNA-3-methyladenine glycosylase I -
  SOR_RS08830 (SOR_1811) ruvA 1771546..1772139 (-) 594 WP_000273401.1 Holliday junction branch migration protein RuvA Machinery gene
  SOR_RS08835 (SOR_1812) - 1772152..1773384 (-) 1233 WP_000657470.1 MFS transporter -
  SOR_RS08840 (SOR_1813) - 1773556..1774053 (+) 498 WP_000761365.1 helix-turn-helix domain-containing protein -
  SOR_RS08845 (SOR_1814) hexB 1774194..1776143 (-) 1950 WP_000018202.1 DNA mismatch repair endonuclease MutL Machinery gene
  SOR_RS08850 (SOR_1816) - 1776457..1776897 (+) 441 WP_000861945.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21754.21 Da        Isoelectric Point: 6.2573

>NTDB_id=33757 SOR_RS08830 WP_000273401.1 1771546..1772139(-) (ruvA) [Streptococcus oralis Uo5]
MYEYLKGIITKITAKYIILEANGIGYILHVANPYAYSGQVNQETQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVASDDLPSKVAVQTSAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=33757 SOR_RS08830 WP_000273401.1 1771546..1772139(-) (ruvA) [Streptococcus oralis Uo5]
ATGTACGAATATCTAAAAGGAATCATTACCAAAATCACTGCTAAATATATCATCCTTGAGGCAAATGGTATCGGTTATAT
CTTGCATGTAGCCAATCCCTATGCCTACTCAGGTCAGGTCAATCAAGAAACTCAGATTTATGTGCACCAAGTTGTTCGTG
AGGATGCCCATCTGCTCTACGGTTTTCGCTCAGAAGATGAGAAAAAGCTCTTTCTCAGTCTGATCTCGGTCTCAGGGATT
GGTCCTGTGTCAGCTCTTGCTATCATCGCAGCTGATGACAATGCTGGCTTGGTTCAAGCGATCGAGACTAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTCGTGG
CTAGTGATGACCTTCCTTCCAAGGTCGCAGTGCAAACCAGCGCTGAAAACCAAGAACTGGAAGAAGCTATGGAAGCCATG
CTGGCACTGGGCTACAAGGCGACTGAACTTAAGAAAATCAAGAAATTCTTTGAAGGAACGACGGATACAGCAGAGAACTA
TATCAAGTCGGCCCTTAAGATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

96.447

100

0.964
  ruvA Streptococcus pneumoniae R6

95.939

100

0.959
  ruvA Streptococcus pneumoniae D39

95.939

100

0.959
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.291

100

0.421

Multiple sequence alignment