Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LHK_RS06785 Genome accession   NC_012559
Coordinates   1435740..1436267 (+) Length   175 a.a.
NCBI ID   WP_012696954.1    Uniprot ID   -
Organism   Laribacter hongkongensis HLHK9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1430740..1441267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHK_RS06775 (LHK_01477) nrfD 1433449..1434552 (-) 1104 WP_012696952.1 NrfD/PsrC family molybdoenzyme membrane anchor subunit -
  LHK_RS06780 (LHK_01478) dsrO 1434555..1435274 (-) 720 WP_012696953.1 sulfate reduction electron transfer complex DsrMKJOP subunit DsrO -
  LHK_RS06785 (LHK_01479) ssb 1435740..1436267 (+) 528 WP_012696954.1 single-stranded DNA-binding protein Machinery gene
  LHK_RS06790 (LHK_01481) - 1436616..1437212 (-) 597 WP_012696956.1 Smr/MutS family protein -
  LHK_RS06795 (LHK_01482) trxB 1437222..1438169 (-) 948 WP_012696957.1 thioredoxin-disulfide reductase -
  LHK_RS06800 (LHK_01483) - 1438334..1438522 (+) 189 WP_012696958.1 hypothetical protein -
  LHK_RS06805 (LHK_01484) - 1438758..1440068 (-) 1311 WP_012696959.1 MFS transporter -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19317.45 Da        Isoelectric Point: 5.1201

>NTDB_id=33750 LHK_RS06785 WP_012696954.1 1435740..1436267(+) (ssb) [Laribacter hongkongensis HLHK9]
MASVNKVILVGNLGRDPEVRYMPNGEAVCNFSIATTDTWKDKNGMRQERTEWHNIVMYRRLAEIAGEYLKKGRPVYVEGR
IRSRKYTGKDGVERTAFEIEATEMQMLGGRDGQGSDSYGGGGYGGGSRAASSSSAGMDEGSPMERVRDDTPPPSPRRPEP
KPASNFDDMDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=33750 LHK_RS06785 WP_012696954.1 1435740..1436267(+) (ssb) [Laribacter hongkongensis HLHK9]
ATGGCATCCGTCAACAAGGTCATTCTGGTCGGTAATCTGGGCCGGGACCCGGAAGTGCGCTACATGCCCAACGGCGAGGC
TGTCTGCAATTTCAGCATCGCCACGACCGATACCTGGAAAGACAAGAACGGCATGCGCCAGGAGCGCACGGAATGGCACA
ACATCGTGATGTATCGCCGATTGGCGGAAATTGCCGGGGAATACCTGAAAAAAGGCCGCCCGGTTTACGTTGAGGGCCGG
ATCCGCTCGCGCAAGTACACGGGCAAGGATGGCGTCGAGCGTACTGCGTTTGAAATCGAAGCAACCGAAATGCAGATGCT
GGGCGGGCGCGATGGCCAGGGCAGCGACAGCTATGGCGGTGGTGGCTACGGCGGCGGCAGCCGGGCTGCTTCTTCCTCTT
CTGCCGGCATGGATGAAGGCAGCCCGATGGAACGGGTACGCGATGACACGCCGCCGCCTTCCCCGCGTCGCCCTGAGCCG
AAGCCGGCCAGTAATTTTGACGACATGGATGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

58.382

98.857

0.577
  ssb Neisseria meningitidis MC58

57.803

98.857

0.571
  ssb Vibrio cholerae strain A1552

43.915

100

0.474
  ssb Glaesserella parasuis strain SC1401

43.956

100

0.457

Multiple sequence alignment