Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   EQH34_RS09310 Genome accession   NZ_CP035246
Coordinates   1835765..1836178 (-) Length   137 a.a.
NCBI ID   WP_000265624.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901941     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1830765..1841178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH34_RS09285 (EQH34_09835) - 1831460..1832284 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  EQH34_RS09290 (EQH34_09840) rnpA 1832259..1832630 (-) 372 WP_000739246.1 ribonuclease P protein component -
  EQH34_RS10445 - 1832647..1832778 (-) 132 WP_000768904.1 hypothetical protein -
  EQH34_RS09295 (EQH34_09845) - 1832779..1833969 (-) 1191 WP_000167766.1 acetate kinase -
  EQH34_RS09300 (EQH34_09850) comYH 1834020..1834973 (-) 954 WP_000345101.1 class I SAM-dependent methyltransferase Machinery gene
  EQH34_RS09305 (EQH34_09855) - 1835034..1835628 (-) 595 Protein_1827 class I SAM-dependent methyltransferase -
  EQH34_RS09310 (EQH34_09860) comGG/cglG 1835765..1836178 (-) 414 WP_000265624.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQH34_RS09315 (EQH34_09865) comGF/cglF 1836156..1836617 (-) 462 WP_000250542.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQH34_RS09320 (EQH34_09870) comGE/cglE 1836580..1836882 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQH34_RS09325 (EQH34_09875) comGD/cglD 1836845..1837249 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQH34_RS09330 (EQH34_09880) comGC/cglC 1837242..1837568 (-) 327 WP_000738626.1 comG operon protein ComGC Machinery gene
  EQH34_RS09335 (EQH34_09885) comGB/cglB 1837570..1838586 (-) 1017 WP_076750272.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQH34_RS09340 (EQH34_09890) comGA/cglA/cilD 1838534..1839475 (-) 942 WP_000249556.1 competence type IV pilus ATPase ComGA Machinery gene
  EQH34_RS09345 (EQH34_09895) - 1839551..1839916 (-) 366 WP_000286415.1 DUF1033 family protein -
  EQH34_RS09350 (EQH34_09900) - 1840067..1841125 (-) 1059 WP_000649466.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15955.42 Da        Isoelectric Point: 10.2472

>NTDB_id=337469 EQH34_RS09310 WP_000265624.1 1835765..1836178(-) (comGG/cglG) [Streptococcus pneumoniae strain TVO_1901941]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKVEQESGEQVFNLGQVSYQNKK
TGLVTRVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=337469 EQH34_RS09310 WP_000265624.1 1835765..1836178(-) (comGG/cglG) [Streptococcus pneumoniae strain TVO_1901941]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCTATGGCTA
AACGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACTGGCTTAGTGACGAGGGTTCGTACGGATAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae D39

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae R6

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae TIGR4

99.27

100

0.993

  comGG/cglG Streptococcus mitis SK321

87.591

100

0.876

  comGG/cglG Streptococcus mitis NCTC 12261

89.256

88.321

0.788

  comYG Streptococcus mutans UA140

38.806

97.81

0.38

  comYG Streptococcus mutans UA159

38.806

97.81

0.38


Multiple sequence alignment