Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   EQH38_RS03455 Genome accession   NZ_CP035242
Coordinates   614400..615059 (-) Length   219 a.a.
NCBI ID   WP_000565010.1    Uniprot ID   A0A0B7M2C6
Organism   Streptococcus pneumoniae strain TVO_1901947     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 609400..620059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH38_RS03425 (EQH38_03610) - 609580..610179 (+) 600 WP_000169915.1 phosphoribosylanthranilate isomerase -
  EQH38_RS03430 (EQH38_03615) trpB 610157..611380 (+) 1224 WP_238097321.1 tryptophan synthase subunit beta -
  EQH38_RS03435 (EQH38_03620) trpA 611373..612149 (+) 777 WP_001127009.1 tryptophan synthase subunit alpha -
  EQH38_RS03440 (EQH38_03625) - 612121..612231 (-) 111 Protein_643 prepilin peptidase -
  EQH38_RS03445 (EQH38_03630) - 612451..613182 (+) 732 WP_000934015.1 hypothetical protein -
  EQH38_RS03450 (EQH38_03635) - 613197..614348 (+) 1152 WP_000481760.1 XRE family transcriptional regulator -
  EQH38_RS03455 (EQH38_03640) cclA/cilC 614400..615059 (-) 660 WP_000565010.1 A24 family peptidase Machinery gene
  EQH38_RS03460 (EQH38_03645) - 615129..615575 (+) 447 WP_238097322.1 GNAT family N-acetyltransferase -
  EQH38_RS03465 (EQH38_03650) - 615648..615887 (+) 240 WP_001005783.1 transposase -
  EQH38_RS03470 (EQH38_03655) - 615997..616200 (-) 204 WP_000109957.1 CsbD family protein -
  EQH38_RS03475 (EQH38_03660) - 616231..616839 (-) 609 WP_000064111.1 Asp23/Gls24 family envelope stress response protein -
  EQH38_RS03480 (EQH38_03665) - 616878..617048 (-) 171 WP_000455066.1 DUF2273 domain-containing protein -
  EQH38_RS03485 (EQH38_03670) amaP 617060..617626 (-) 567 WP_000030213.1 alkaline shock response membrane anchor protein AmaP -
  EQH38_RS03490 (EQH38_03675) - 617710..617874 (-) 165 WP_001809002.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  EQH38_RS03495 (EQH38_03680) mgaSpn 618316..619797 (+) 1482 WP_001205280.1 virulence factor transcriptional regulator MgaSpn -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24845.99 Da        Isoelectric Point: 7.5762

>NTDB_id=337133 EQH38_RS03455 WP_000565010.1 614400..615059(-) (cclA/cilC) [Streptococcus pneumoniae strain TVO_1901947]
MIDFYFFLVGSILASFLGLVIDRFPEQSIISSASHCDSCQTRLRPLDLIPILSQVFNRFCCRYCKVRYPVWYALFELGLG
LLFLLYSWELLSLSQVILITAGLTLGIYDFRHQEYPLLVWMTFHLILIASSGWNLVMVSFLILGILAHFIDIRMGAGDFL
FLASCALVFSVTELLILIQFASATGILAFLLQKKKERLPFVPFLLLAACVIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=337133 EQH38_RS03455 WP_000565010.1 614400..615059(-) (cclA/cilC) [Streptococcus pneumoniae strain TVO_1901947]
ATGATTGATTTTTATTTTTTTCTCGTCGGGAGCATTCTCGCTTCCTTTCTTGGTTTGGTCATTGACCGTTTTCCAGAGCA
ATCCATTATCAGTTCAGCCAGTCACTGCGATTCCTGTCAGACTCGCTTGCGTCCCTTAGATTTGATTCCGATTCTCTCAC
AGGTCTTCAATCGCTTTTGCTGTCGCTACTGCAAGGTCCGCTATCCTGTCTGGTATGCCCTCTTTGAACTAGGCTTAGGA
CTCCTCTTTCTGCTTTACTCTTGGGAATTACTTTCCTTGAGTCAAGTCATCCTAATCACTGCTGGTTTGACCTTGGGCAT
CTACGACTTTCGCCATCAGGAATATCCCTTACTGGTCTGGATGACTTTCCACCTAATCCTAATAGCTTCCTCTGGCTGGA
ATCTGGTCATGGTCTCCTTCCTCATACTTGGAATTTTGGCTCATTTTATCGATATCCGCATGGGTGCAGGGGATTTCCTT
TTTTTAGCTTCTTGCGCTCTCGTCTTTAGCGTAACGGAGTTACTGATCTTGATTCAGTTCGCTTCTGCGACGGGTATCCT
GGCCTTTCTCCTGCAAAAGAAAAAGGAAAGACTTCCTTTCGTGCCTTTCCTCTTACTTGCTGCTTGTGTGATTATTTTTG
GTAAGCTACTGCTTGTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7M2C6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae Rx1

100

100

1
  cclA/cilC Streptococcus pneumoniae D39

100

100

1
  cclA/cilC Streptococcus pneumoniae R6

100

100

1
  cclA/cilC Streptococcus pneumoniae TIGR4

94.977

100

0.95
  cclA/cilC Streptococcus mitis SK321

92.694

100

0.927
  cclA/cilC Streptococcus mitis NCTC 12261

87.671

100

0.877

Multiple sequence alignment