Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   EQH39_RS08680 Genome accession   NZ_CP035241
Coordinates   1716311..1717135 (-) Length   274 a.a.
NCBI ID   WP_001036781.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901948     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1711311..1722135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH39_RS08675 (EQH39_09140) - 1714689..1716020 (-) 1332 WP_000390042.1 hemolysin family protein -
  EQH39_RS08680 (EQH39_09145) endA 1716311..1717135 (-) 825 WP_001036781.1 DNA-entry nuclease EndA Machinery gene
  EQH39_RS08685 (EQH39_09150) - 1717174..1717362 (-) 189 WP_001036519.1 DNA-directed RNA polymerase subunit beta -
  EQH39_RS08690 (EQH39_09155) murA 1717355..1718638 (-) 1284 WP_000358028.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EQH39_RS08695 (EQH39_09160) - 1718662..1718892 (-) 231 WP_000250384.1 DUF1146 family protein -
  EQH39_RS08700 (EQH39_09165) sepM 1718950..1719987 (-) 1038 WP_000727277.1 SepM family pheromone-processing serine protease Regulator
  EQH39_RS08705 (EQH39_09170) coaD 1719971..1720459 (-) 489 WP_001280769.1 pantetheine-phosphate adenylyltransferase -
  EQH39_RS08710 (EQH39_09175) rsmD 1720449..1720988 (-) 540 WP_000706960.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  EQH39_RS08715 (EQH39_09180) asnA 1721053..1722045 (-) 993 WP_000747993.1 aspartate--ammonia ligase -

Sequence

Protein


Download         Length: 274 a.a.        Molecular weight: 29945.70 Da        Isoelectric Point: 10.1700

>NTDB_id=337076 EQH39_RS08680 WP_001036781.1 1716311..1717135(-) (endA) [Streptococcus pneumoniae strain TVO_1901948]
MNKKTRQTLIGLLVLLLLSTGSYYIKQMQSAPNSPKTKLSQKKQAPEAPSQALAESVLTDAVKSQIKGSLEWNGSGAFIV
NGNKTNLDAKVSSKPYADNKTKTVGKETVPTVANALLSKATRQYKNRKETGNGSTSWTPPGWHQVKNLKGSYTHAVDRGH
LLGYALIGGLDGFDASTSNPKNIAVQTAWANQAQAEYSTGQNYYESKVRKALDQNKRVRYRVTLYYASNEDLVPSASQIE
AKSSDGELEFNVLVPNVQKGLQLDYRTGEVTVTQ

Nucleotide


Download         Length: 825 bp        

>NTDB_id=337076 EQH39_RS08680 WP_001036781.1 1716311..1717135(-) (endA) [Streptococcus pneumoniae strain TVO_1901948]
ATGAACAAAAAAACAAGACAGACACTAATCGGACTGCTAGTGTTATTGCTTTTGTCTACAGGGAGCTATTATATCAAGCA
GATGCAGTCGGCACCTAATAGTCCTAAAACCAAGCTTAGTCAGAAAAAACAAGCGCCTGAAGCTCCTAGTCAAGCATTGG
CAGAGAGTGTCTTAACAGACGCAGTCAAGAGTCAAATAAAGGGGAGTCTGGAGTGGAATGGCTCAGGTGCTTTTATCGTC
AATGGTAATAAAACAAATCTAGATGCCAAGGTTTCAAGTAAGCCCTACGCTGACAATAAAACAAAGACAGTGGGCAAGGA
AACTGTTCCAACCGTAGCTAATGCCCTCTTGTCTAAGGCCACTCGTCAGTACAAGAATCGTAAAGAAACTGGGAATGGTT
CAACTTCTTGGACTCCTCCAGGTTGGCATCAGGTCAAGAATCTAAAGGGCTCTTATACCCATGCAGTCGATAGAGGTCAT
TTGTTAGGCTATGCCTTAATCGGTGGTTTGGATGGTTTTGATGCCTCAACAAGCAATCCTAAAAACATTGCTGTTCAGAC
AGCCTGGGCAAATCAGGCACAAGCCGAGTATTCGACTGGTCAAAACTACTATGAAAGCAAGGTGCGTAAAGCCTTGGACC
AAAACAAGCGTGTCCGTTACCGTGTAACCCTTTACTACGCTTCAAACGAGGATTTAGTTCCCTCAGCTTCACAGATTGAA
GCCAAGTCTTCGGATGGAGAATTGGAATTCAATGTTCTAGTTCCCAATGTTCAAAAGGGACTTCAACTGGATTACCGAAC
TGGAGAAGTAACTGTAACTCAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(75-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

98.905

100

0.989
  endA Streptococcus pneumoniae D39

98.905

100

0.989
  endA Streptococcus pneumoniae R6

98.905

100

0.989
  endA Streptococcus pneumoniae TIGR4

98.905

100

0.989

Multiple sequence alignment