Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FZN31_RS22160 Genome accession   NZ_CP043414
Coordinates   4693823..4694359 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain EC42405     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4688823..4699359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZN31_RS22140 (FZN31_22535) - 4688886..4689914 (+) 1029 WP_000051319.1 LacI family DNA-binding transcriptional regulator -
  FZN31_RS22145 (FZN31_22540) - 4690151..4691080 (+) 930 WP_000607107.1 dihydrodipicolinate synthase family protein -
  FZN31_RS22150 (FZN31_22545) - 4691352..4692233 (+) 882 WP_105288239.1 fumarylacetoacetate hydrolase family protein -
  FZN31_RS22155 (FZN31_22550) - 4692324..4693610 (+) 1287 WP_105288238.1 anaerobic C4-dicarboxylate transporter family protein -
  FZN31_RS22160 (FZN31_22555) ssb 4693823..4694359 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FZN31_RS22165 (FZN31_22560) uvrA 4694614..4697436 (+) 2823 WP_032185682.1 excinuclease ABC subunit UvrA Machinery gene
  FZN31_RS22170 (FZN31_22565) yjbR 4697471..4697827 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  FZN31_RS22175 (FZN31_22570) yjbQ 4697831..4698247 (-) 417 WP_000270364.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FZN31_RS22180 (FZN31_22575) aphA 4698358..4699071 (-) 714 WP_105288237.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=337045 FZN31_RS22160 WP_000168305.1 4693823..4694359(-) (ssb) [Escherichia coli strain EC42405]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=337045 FZN31_RS22160 WP_000168305.1 4693823..4694359(-) (ssb) [Escherichia coli strain EC42405]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAAGATCGCTACACCACTGAAGTTGTGGTAAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGATTTTGATGACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment