Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   EQH39_RS00105 Genome accession   NZ_CP035241
Coordinates   21273..21509 (+) Length   78 a.a.
NCBI ID   WP_000939546.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901948     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 16273..26509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH39_RS00100 (EQH39_00100) - 20235..21008 (-) 774 Protein_14 transposase -
  EQH39_RS00105 (EQH39_00105) comW 21273..21509 (+) 237 WP_000939546.1 sigma(X)-activator ComW Regulator
  EQH39_RS00110 (EQH39_00110) - 21740..23026 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  EQH39_RS00115 (EQH39_00115) tadA 23227..23694 (+) 468 WP_000291875.1 tRNA adenosine(34) deaminase TadA -
  EQH39_RS00125 (EQH39_00125) - 23880..24323 (+) 444 WP_000701993.1 dUTP diphosphatase -
  EQH39_RS00130 (EQH39_00130) - 24325..24840 (+) 516 WP_000691236.1 histidine phosphatase family protein -
  EQH39_RS00135 (EQH39_00135) radA 24854..26215 (+) 1362 WP_078152438.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9686.14 Da        Isoelectric Point: 6.7051

>NTDB_id=337026 EQH39_RS00105 WP_000939546.1 21273..21509(+) (comW) [Streptococcus pneumoniae strain TVO_1901948]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=337026 EQH39_RS00105 WP_000939546.1 21273..21509(+) (comW) [Streptococcus pneumoniae strain TVO_1901948]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

98.718

100

0.987
  comW Streptococcus pneumoniae D39

98.718

100

0.987
  comW Streptococcus pneumoniae R6

98.718

100

0.987
  comW Streptococcus pneumoniae TIGR4

98.718

100

0.987
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756

Multiple sequence alignment