Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   FY406_RS02335 Genome accession   NZ_CP043405
Coordinates   498223..498816 (-) Length   197 a.a.
NCBI ID   WP_003089915.1    Uniprot ID   A0ABN0GW00
Organism   Streptococcus ratti strain ATCC 31377     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 493223..503816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS02310 (FY406_02310) - 493408..493827 (-) 420 WP_003089906.1 hypothetical protein -
  FY406_RS02315 (FY406_02315) spx 494415..494813 (-) 399 WP_003089907.1 transcriptional regulator Spx -
  FY406_RS02320 (FY406_02320) recA 494898..496046 (-) 1149 WP_003089908.1 recombinase RecA Machinery gene
  FY406_RS02325 (FY406_02325) cinA 496089..497345 (-) 1257 WP_003089911.1 competence/damage-inducible protein A Machinery gene
  FY406_RS02330 (FY406_02330) - 497625..498185 (-) 561 WP_003089912.1 DNA-3-methyladenine glycosylase I -
  FY406_RS02335 (FY406_02335) ruvA 498223..498816 (-) 594 WP_003089915.1 Holliday junction branch migration protein RuvA Machinery gene
  FY406_RS02340 (FY406_02340) hexB 499101..501056 (-) 1956 WP_003089917.1 DNA mismatch repair endonuclease MutL Machinery gene
  FY406_RS02345 (FY406_02345) hexA 501130..503679 (-) 2550 WP_003089919.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21784.16 Da        Isoelectric Point: 6.2604

>NTDB_id=336813 FY406_RS02335 WP_003089915.1 498223..498816(-) (ruvA) [Streptococcus ratti strain ATCC 31377]
MFDYIKGKLTKITAKYIVVEAGGLGYIINVANPYSFSEQMNQELKIYLHHVVREDAQLLYGFHTEDEKSVFLNLISVSGI
GPTSALAIIAADDNDGLVAAIDKSDVTYLMKFPKIGKKTAQQMVLDLAGKFAVAEQPTAGKESQRSVQENKDLEEALEAL
LALGYKAKELKKIRTFFEGTNDTAENYIKAALKMLIK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=336813 FY406_RS02335 WP_003089915.1 498223..498816(-) (ruvA) [Streptococcus ratti strain ATCC 31377]
ATGTTTGATTATATCAAAGGCAAATTGACAAAAATCACAGCAAAATATATTGTCGTTGAGGCAGGCGGTCTGGGCTATAT
CATCAATGTTGCTAATCCATATAGTTTTTCAGAGCAGATGAATCAGGAATTGAAAATTTATCTGCATCATGTGGTACGCG
AGGATGCCCAGCTCCTTTACGGCTTTCATACAGAGGACGAAAAGTCGGTTTTCCTCAATCTCATCTCTGTTTCAGGGATT
GGACCTACCTCAGCGCTTGCCATTATCGCAGCCGATGATAATGACGGTTTGGTAGCCGCTATCGATAAGAGCGATGTTAC
CTATTTAATGAAATTTCCGAAAATCGGAAAGAAAACAGCCCAGCAAATGGTTTTAGACCTAGCTGGCAAATTTGCAGTTG
CTGAACAGCCGACGGCCGGCAAAGAAAGCCAGCGTTCGGTTCAAGAAAATAAAGATCTGGAAGAAGCCCTAGAAGCCCTT
TTGGCACTGGGATATAAGGCCAAAGAACTGAAAAAAATCCGTACCTTCTTTGAAGGAACTAATGACACAGCTGAGAATTA
CATCAAGGCAGCCTTAAAAATGCTTATTAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(153-193)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

69.543

100

0.695
  ruvA Streptococcus pneumoniae R6

69.543

100

0.695
  ruvA Streptococcus pneumoniae D39

69.543

100

0.695
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.426

Multiple sequence alignment