Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FZC46_RS21260 Genome accession   NZ_CP043334
Coordinates   4376659..4377195 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain WCHEC115106     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4371659..4382195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZC46_RS21230 (FZC46_21330) soxR 4372611..4373075 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  FZC46_RS21235 (FZC46_21335) soxS 4373161..4373484 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  FZC46_RS21240 (FZC46_21340) pdeC 4373487..4374206 (-) 720 Protein_4174 c-di-GMP phosphodiesterase PdeC -
  FZC46_RS21250 (FZC46_21350) pdeC 4374974..4375849 (-) 876 Protein_4176 c-di-GMP phosphodiesterase PdeC -
  FZC46_RS21255 (FZC46_21355) yjcB 4376279..4376560 (+) 282 WP_001295689.1 YjcB family protein -
  FZC46_RS21260 (FZC46_21360) ssb 4376659..4377195 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FZC46_RS21265 (FZC46_21365) uvrA 4377449..4380271 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  FZC46_RS21270 (FZC46_21370) yjbR 4380306..4380662 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  FZC46_RS21275 (FZC46_21375) yjbQ 4380666..4381082 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FZC46_RS21280 (FZC46_21380) aphA 4381193..4381906 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=336507 FZC46_RS21260 WP_000168305.1 4376659..4377195(-) (ssb) [Escherichia coli strain WCHEC115106]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=336507 FZC46_RS21260 WP_000168305.1 4376659..4377195(-) (ssb) [Escherichia coli strain WCHEC115106]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489