Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EQZ01_RS21560 Genome accession   NZ_CP035231
Coordinates   4116552..4117070 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM103571     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4111552..4122070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS21530 (EQZ01_21530) yyaJ 4112055..4113410 (+) 1356 WP_128738561.1 MFS transporter -
  EQZ01_RS21535 (EQZ01_21535) maa 4113444..4113998 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  EQZ01_RS21540 (EQZ01_21540) yyaH 4114016..4114396 (-) 381 WP_076457323.1 VOC family protein -
  EQZ01_RS21545 (EQZ01_21545) ccpB 4114452..4115387 (-) 936 WP_076457322.1 transcriptional regulator CcpB -
  EQZ01_RS21550 (EQZ01_21550) xth 4115447..4116205 (-) 759 WP_003226843.1 exodeoxyribonuclease III -
  EQZ01_RS21555 (EQZ01_21555) rpsR 4116269..4116508 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  EQZ01_RS21560 (EQZ01_21560) ssbA 4116552..4117070 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  EQZ01_RS21565 (EQZ01_21565) rpsF 4117111..4117398 (-) 288 WP_024571351.1 30S ribosomal protein S6 -
  EQZ01_RS21570 (EQZ01_21570) ychF 4117509..4118609 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  EQZ01_RS21575 (EQZ01_21575) yyaE 4118736..4120739 (-) 2004 WP_128738563.1 molybdopterin-dependent oxidoreductase -
  EQZ01_RS21580 (EQZ01_21580) yyzM 4120790..4120996 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=336496 EQZ01_RS21560 WP_003219228.1 4116552..4117070(-) (ssbA) [Bacillus subtilis strain SRCM103571]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=336496 EQZ01_RS21560 WP_003219228.1 4116552..4117070(-) (ssbA) [Bacillus subtilis strain SRCM103571]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment