Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FZC46_RS17210 Genome accession   NZ_CP043334
Coordinates   3537499..3538104 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain WCHEC115106     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3532499..3543104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZC46_RS17190 (FZC46_17290) aes 3532536..3533495 (+) 960 WP_000801846.1 acetyl esterase -
  FZC46_RS17195 (FZC46_17295) hemH 3533492..3534454 (-) 963 WP_001250088.1 ferrochelatase -
  FZC46_RS17200 (FZC46_17305) adk 3534690..3535334 (-) 645 WP_001220233.1 adenylate kinase -
  FZC46_RS17205 (FZC46_17310) htpG 3535515..3537389 (-) 1875 WP_000678213.1 molecular chaperone HtpG -
  FZC46_RS17210 (FZC46_17315) recR 3537499..3538104 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FZC46_RS17215 (FZC46_17320) ybaB 3538104..3538433 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FZC46_RS17220 (FZC46_17325) dnaX 3538486..3540417 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  FZC46_RS17225 (FZC46_17330) apt 3540546..3541097 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FZC46_RS17230 (FZC46_17335) ybaN 3541250..3541627 (-) 378 WP_001188905.1 DUF454 family protein -
  FZC46_RS17235 (FZC46_17340) priC 3541697..3542224 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  FZC46_RS17240 (FZC46_17345) rsmS 3542238..3542399 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  FZC46_RS25640 - 3542452..3542550 (-) 99 Protein_3388 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=336496 FZC46_RS17210 WP_001195025.1 3537499..3538104(-) (recR) [Escherichia coli strain WCHEC115106]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=336496 FZC46_RS17210 WP_001195025.1 3537499..3538104(-) (recR) [Escherichia coli strain WCHEC115106]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment