Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EQY76_RS21390 Genome accession   NZ_CP035230
Coordinates   4034426..4034944 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM103551     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4029426..4039944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQY76_RS21360 (EQY76_21360) yyaJ 4029929..4031284 (+) 1356 WP_069703959.1 MFS transporter -
  EQY76_RS21365 (EQY76_21365) maa 4031318..4031872 (-) 555 WP_015250785.1 sugar O-acetyltransferase -
  EQY76_RS21370 (EQY76_21370) yyaH 4031888..4032268 (-) 381 WP_015250784.1 VOC family protein -
  EQY76_RS21375 (EQY76_21375) ccpB 4032324..4033259 (-) 936 WP_017695815.1 transcriptional regulator CcpB -
  EQY76_RS21380 (EQY76_21380) xth 4033319..4034077 (-) 759 WP_069703958.1 exodeoxyribonuclease III -
  EQY76_RS21385 (EQY76_21385) rpsR 4034143..4034382 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  EQY76_RS21390 (EQY76_21390) ssbA 4034426..4034944 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  EQY76_RS21395 (EQY76_21395) rpsF 4034985..4035272 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  EQY76_RS21400 (EQY76_21400) ychF 4035383..4036483 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  EQY76_RS21405 (EQY76_21405) yyaE 4036610..4038613 (-) 2004 WP_046381481.1 molybdopterin-dependent oxidoreductase -
  EQY76_RS21410 (EQY76_21410) yyzM 4038664..4038870 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=336416 EQY76_RS21390 WP_003219228.1 4034426..4034944(-) (ssbA) [Bacillus subtilis strain SRCM103551]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=336416 EQY76_RS21390 WP_003219228.1 4034426..4034944(-) (ssbA) [Bacillus subtilis strain SRCM103551]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment