Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EQW70_RS21885 Genome accession   NZ_CP035226
Coordinates   4175597..4176115 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM103517     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4170597..4181115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS21855 (EQW70_21855) yyaJ 4171100..4172455 (+) 1356 WP_128740898.1 MFS transporter -
  EQW70_RS21860 (EQW70_21860) maa 4172489..4173043 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  EQW70_RS21865 (EQW70_21865) yyaH 4173061..4173441 (-) 381 WP_032724962.1 VOC family protein -
  EQW70_RS21870 (EQW70_21870) ccpB 4173497..4174432 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  EQW70_RS21875 (EQW70_21875) xth 4174491..4175249 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  EQW70_RS21880 (EQW70_21880) rpsR 4175314..4175553 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  EQW70_RS21885 (EQW70_21885) ssbA 4175597..4176115 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  EQW70_RS21890 (EQW70_21890) rpsF 4176156..4176443 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  EQW70_RS21895 (EQW70_21895) ychF 4176554..4177654 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  EQW70_RS21900 (EQW70_21900) yyaE 4177781..4179784 (-) 2004 WP_128740899.1 molybdopterin-dependent oxidoreductase -
  EQW70_RS21905 (EQW70_21905) yyzM 4179835..4180041 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=336257 EQW70_RS21885 WP_003219228.1 4175597..4176115(-) (ssbA) [Bacillus subtilis strain SRCM103517]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=336257 EQW70_RS21885 WP_003219228.1 4175597..4176115(-) (ssbA) [Bacillus subtilis strain SRCM103517]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment