Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   EQW70_RS19080 Genome accession   NZ_CP035226
Coordinates   3614844..3615533 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM103517     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3609844..3620533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS19045 (EQW70_19045) flgN 3610022..3610504 (-) 483 WP_014481048.1 flagellar protein FlgN -
  EQW70_RS19050 (EQW70_19050) flgM 3610520..3610786 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  EQW70_RS19055 (EQW70_19055) yvyF 3610867..3611286 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  EQW70_RS19060 (EQW70_19060) comFC 3611360..3612082 (-) 723 WP_124047882.1 comF operon protein ComFC Machinery gene
  EQW70_RS19065 (EQW70_19065) comFB 3612046..3612342 (-) 297 WP_003227989.1 late competence protein ComFB -
  EQW70_RS19070 (EQW70_19070) comFA 3612402..3613793 (-) 1392 WP_128740769.1 ATP-dependent helicase ComFA Machinery gene
  EQW70_RS19075 (EQW70_19075) fakBA 3613901..3614746 (-) 846 WP_003227986.1 DegV family protein -
  EQW70_RS19080 (EQW70_19080) degU 3614844..3615533 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EQW70_RS19085 (EQW70_19085) degS 3615616..3616773 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  EQW70_RS19090 (EQW70_19090) yvyE 3616990..3617643 (+) 654 WP_003227979.1 YigZ family protein -
  EQW70_RS19095 (EQW70_19095) tagV 3617643..3618818 (+) 1176 WP_103803401.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  EQW70_RS19100 (EQW70_19100) tagO 3618891..3619967 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=336248 EQW70_RS19080 WP_003219701.1 3614844..3615533(-) (degU) [Bacillus subtilis strain SRCM103517]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=336248 EQW70_RS19080 WP_003219701.1 3614844..3615533(-) (degU) [Bacillus subtilis strain SRCM103517]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment