Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EQW70_RS19060 Genome accession   NZ_CP035226
Coordinates   3611360..3612082 (-) Length   240 a.a.
NCBI ID   WP_124047882.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103517     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3606360..3617082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS19025 (EQW70_19025) fliW 3606499..3606930 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  EQW70_RS19030 (EQW70_19030) yviE 3606951..3607526 (-) 576 WP_015384781.1 DUF6470 family protein -
  EQW70_RS19035 (EQW70_19035) flgL 3607573..3608469 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  EQW70_RS19040 (EQW70_19040) flgK 3608480..3610003 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  EQW70_RS19045 (EQW70_19045) flgN 3610022..3610504 (-) 483 WP_014481048.1 flagellar protein FlgN -
  EQW70_RS19050 (EQW70_19050) flgM 3610520..3610786 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  EQW70_RS19055 (EQW70_19055) yvyF 3610867..3611286 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  EQW70_RS19060 (EQW70_19060) comFC 3611360..3612082 (-) 723 WP_124047882.1 comF operon protein ComFC Machinery gene
  EQW70_RS19065 (EQW70_19065) comFB 3612046..3612342 (-) 297 WP_003227989.1 late competence protein ComFB -
  EQW70_RS19070 (EQW70_19070) comFA 3612402..3613793 (-) 1392 WP_128740769.1 ATP-dependent helicase ComFA Machinery gene
  EQW70_RS19075 (EQW70_19075) fakBA 3613901..3614746 (-) 846 WP_003227986.1 DegV family protein -
  EQW70_RS19080 (EQW70_19080) degU 3614844..3615533 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EQW70_RS19085 (EQW70_19085) degS 3615616..3616773 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27522.77 Da        Isoelectric Point: 9.1349

>NTDB_id=336246 EQW70_RS19060 WP_124047882.1 3611360..3612082(-) (comFC) [Bacillus subtilis strain SRCM103517]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMDIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=336246 EQW70_RS19060 WP_124047882.1 3611360..3612082(-) (comFC) [Bacillus subtilis strain SRCM103517]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGGATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988

Multiple sequence alignment