Detailed information NTG0033617

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: SGGBAA2069_RS05220
• Genome accession: NC_015215
• Coordinates: 1034318..1034998 (+)
• Length: 226 a.a.
• NCBI ID: WP_013643062.1
• Uniprot ID: -
• Organism: Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1029318..1039998

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGGBAA2069_RS05195 (SGGBAA2069_c09800)	-	1030363..1030977 (+)	615	WP_009854108.1	histidine phosphatase family protein	-
SGGBAA2069_RS05200 (SGGBAA2069_c09810)	-	1030980..1031603 (+)	624	WP_013643059.1	histidine phosphatase family protein	-
SGGBAA2069_RS05205 (SGGBAA2069_c09820)	-	1031596..1032198 (+)	603	WP_013643060.1	histidine phosphatase family protein	-
SGGBAA2069_RS05210 (SGGBAA2069_c09830)	-	1032307..1033425 (+)	1119	WP_012961922.1	AI-2E family transporter	-
SGGBAA2069_RS05215 (SGGBAA2069_c09840)	-	1033432..1034271 (+)	840	WP_013643061.1	glycosyltransferase family 8 protein	-
SGGBAA2069_RS05220 (SGGBAA2069_c09850)	radC	1034318..1034998 (+)	681	WP_013643062.1	RadC family protein	Machinery gene
SGGBAA2069_RS05225 (SGGBAA2069_c09860)	-	1035154..1035801 (-)	648	WP_013643063.1	redox-sensing transcriptional repressor Rex	-
SGGBAA2069_RS05230 (SGGBAA2069_c09870)	-	1035947..1036294 (-)	348	WP_003064609.1	DUF1831 domain-containing protein	-
SGGBAA2069_RS05235 (SGGBAA2069_c09880)	-	1036296..1037411 (-)	1116	WP_013643064.1	cysteine desulfurase family protein	-
SGGBAA2069_RS05240 (SGGBAA2069_c09890)	-	1037419..1038390 (-)	972	WP_009854116.1	ribose-phosphate diphosphokinase	-
SGGBAA2069_RS05245 (SGGBAA2069_c09900)	-	1038476..1039045 (-)	570	WP_013643065.1	CYTH domain-containing protein	-
SGGBAA2069_RS05250 (SGGBAA2069_c09910)	-	1039178..1039843 (+)	666	WP_003064613.1	GTP pyrophosphokinase family protein	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 26039.20 Da
• Isoelectric Point: 7.0420

>NTDB_id=33617 SGGBAA2069_RS05220 WP_013643062.1 1034318..1034998(+) (radC) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
MYAIEMKADAMLPRERLRDLGAEHLSNQELLSILLRTGTKTTPVLEVANQILKNLDSLADFQHLSLQELQKINGIGYVKS
IEIKAMIELAKRISKAEYVQKERIMSSERLARKMMLELSDQKQEHLVAIYLDTQNRIIEQRTIFIGSVRRSIAEPREILY
YACKNMATSVIIVHNHPSGSPEPSENDLQFTQKMKRACEDIGIICLDHIVIGKYQYYSFREETDVL

Nucleotide

• Length: 681 bp

>NTDB_id=33617 SGGBAA2069_RS05220 WP_013643062.1 1034318..1034998(+) (radC) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
ATGTATGCAATTGAAATGAAAGCAGATGCTATGTTGCCACGAGAACGCTTGAGAGATTTGGGGGCAGAGCATCTTAGCAA
TCAGGAACTATTATCTATTTTATTGCGAACAGGAACAAAAACAACCCCAGTTTTGGAAGTTGCCAATCAAATCTTGAAAA
ATCTAGATAGCCTAGCTGATTTTCAACACCTATCCCTGCAAGAATTGCAAAAAATCAATGGTATTGGCTATGTTAAATCA
ATTGAAATCAAAGCAATGATTGAACTAGCAAAGCGTATTAGCAAGGCTGAATATGTCCAAAAAGAACGCATTATGAGCAG
CGAACGCCTAGCACGTAAAATGATGTTAGAATTGAGCGACCAAAAACAAGAGCACTTGGTGGCTATTTATCTGGATACGC
AAAATCGAATTATTGAACAACGAACGATTTTTATCGGTTCTGTTCGCCGTTCGATTGCTGAACCACGTGAAATTCTCTAT
TATGCATGCAAAAATATGGCAACATCAGTTATTATTGTCCATAATCATCCGTCAGGCTCCCCAGAGCCAAGCGAGAACGA
CCTGCAATTTACCCAAAAAATGAAACGCGCTTGTGAAGATATTGGCATTATTTGCCTTGACCATATCGTCATTGGAAAAT
ACCAATATTACAGCTTCCGAGAAGAAACAGATGTTTTGTAA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (12-80)

• RadC-like JAB domain (RadC) (106-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Streptococcus gordonii str. Challis substr. CH1	60.177	100	0.602
radC	Streptococcus pneumoniae TIGR4	59.292	100	0.593
radC	Streptococcus pneumoniae R6	58.85	100	0.589
radC	Streptococcus pneumoniae D39	58.85	100	0.589
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	46.19	92.92	0.429