Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EQJ08_RS20915 Genome accession   NZ_CP035167
Coordinates   4041419..4041937 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM104008     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4036419..4046937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ08_RS20885 (EQJ08_20885) yyaJ 4036923..4038278 (+) 1356 WP_041850266.1 MFS transporter -
  EQJ08_RS20890 (EQJ08_20890) maa 4038312..4038866 (-) 555 WP_015250785.1 sugar O-acetyltransferase -
  EQJ08_RS20895 (EQJ08_20895) yyaH 4038882..4039262 (-) 381 WP_015715075.1 VOC family protein -
  EQJ08_RS20900 (EQJ08_20900) ccpB 4039318..4040253 (-) 936 WP_015715076.1 transcriptional regulator CcpB -
  EQJ08_RS20905 (EQJ08_20905) xth 4040313..4041071 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  EQJ08_RS20910 (EQJ08_20910) rpsR 4041136..4041375 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  EQJ08_RS20915 (EQJ08_20915) ssbA 4041419..4041937 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  EQJ08_RS20920 (EQJ08_20920) rpsF 4041978..4042265 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  EQJ08_RS20925 (EQJ08_20925) ychF 4042376..4043476 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  EQJ08_RS20930 (EQJ08_20930) yyaE 4043603..4045606 (-) 2004 WP_015715077.1 molybdopterin-dependent oxidoreductase -
  EQJ08_RS20935 (EQJ08_20935) yyzM 4045657..4045863 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=335478 EQJ08_RS20915 WP_003219228.1 4041419..4041937(-) (ssbA) [Bacillus subtilis strain SRCM104008]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=335478 EQJ08_RS20915 WP_003219228.1 4041419..4041937(-) (ssbA) [Bacillus subtilis strain SRCM104008]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment