Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EQI48_RS21540 | Genome accession | NZ_CP035164 |
| Coordinates | 4119005..4119523 (-) | Length | 172 a.a. |
| NCBI ID | WP_003219228.1 | Uniprot ID | A0A063XE16 |
| Organism | Bacillus subtilis strain SRCM104005 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 4103258..4119851 | 4119005..4119523 | within | 0 |
Gene organization within MGE regions
Location: 4103258..4119851
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQI48_RS21435 (EQI48_21435) | yyaQ | 4103258..4103614 (+) | 357 | WP_086344547.1 | MmcQ/YjbR family DNA-binding protein | - |
| EQI48_RS21440 (EQI48_21440) | yyaP | 4103774..4104340 (+) | 567 | WP_128471963.1 | dihydrofolate reductase family protein | - |
| EQI48_RS21445 (EQI48_21445) | - | 4104599..4104749 (+) | 151 | Protein_4139 | DUF255 domain-containing protein | - |
| EQI48_RS21450 (EQI48_21450) | tet(L) | 4104852..4106228 (-) | 1377 | WP_029726095.1 | tetracycline efflux MFS transporter Tet(L) | - |
| EQI48_RS21990 (EQI48_21455) | - | 4106262..4106444 (-) | 183 | WP_110109553.1 | tetracycline resistance efflux system leader peptide | - |
| EQI48_RS21460 (EQI48_21460) | - | 4106578..4106748 (+) | 171 | Protein_4142 | DUF255 domain-containing protein | - |
| EQI48_RS21465 (EQI48_21465) | - | 4106816..4107292 (-) | 477 | WP_050496387.1 | DUF4944 domain-containing protein | - |
| EQI48_RS21470 (EQI48_21470) | - | 4107430..4108404 (+) | 975 | WP_029726093.1 | amidase domain-containing protein | - |
| EQI48_RS21475 (EQI48_21475) | yyaN | 4108674..4109090 (+) | 417 | WP_010886646.1 | MerR family transcriptional regulator | - |
| EQI48_RS21480 (EQI48_21480) | yyaM | 4109087..4110004 (+) | 918 | WP_029726092.1 | EamA family transporter | - |
| EQI48_RS21485 (EQI48_21485) | - | 4110076..4110244 (+) | 169 | Protein_4147 | DUF255 domain-containing protein | - |
| EQI48_RS21490 (EQI48_21490) | - | 4110304..4110939 (-) | 636 | WP_029726091.1 | LysE family translocator | - |
| EQI48_RS21500 (EQI48_21500) | yyaL | 4111296..4113385 (+) | 2090 | Protein_4149 | thioredoxin domain-containing protein | - |
| EQI48_RS21505 (EQI48_21505) | yyaK | 4113382..4114281 (-) | 900 | WP_015250787.1 | type II CAAX endopeptidase family protein | - |
| EQI48_RS21510 (EQI48_21510) | yyaJ | 4114507..4115862 (+) | 1356 | WP_029318525.1 | MFS transporter | - |
| EQI48_RS21515 (EQI48_21515) | maa | 4115896..4116450 (-) | 555 | WP_128471964.1 | sugar O-acetyltransferase | - |
| EQI48_RS21520 (EQI48_21520) | yyaH | 4116468..4116848 (-) | 381 | WP_029726089.1 | VOC family protein | - |
| EQI48_RS21525 (EQI48_21525) | ccpB | 4116904..4117839 (-) | 936 | WP_029726088.1 | transcriptional regulator CcpB | - |
| EQI48_RS21530 (EQI48_21530) | xth | 4117899..4118657 (-) | 759 | WP_029726087.1 | exodeoxyribonuclease III | - |
| EQI48_RS21535 (EQI48_21535) | rpsR | 4118722..4118961 (-) | 240 | WP_003219224.1 | 30S ribosomal protein S18 | - |
| EQI48_RS21540 (EQI48_21540) | ssbA | 4119005..4119523 (-) | 519 | WP_003219228.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
| EQI48_RS21545 (EQI48_21545) | rpsF | 4119564..4119851 (-) | 288 | WP_003244064.1 | 30S ribosomal protein S6 | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18742.31 Da Isoelectric Point: 4.7621
>NTDB_id=335236 EQI48_RS21540 WP_003219228.1 4119005..4119523(-) (ssbA) [Bacillus subtilis strain SRCM104005]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=335236 EQI48_RS21540 WP_003219228.1 4119005..4119523(-) (ssbA) [Bacillus subtilis strain SRCM104005]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.192 |
100 |
0.599 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
61.628 |
0.395 |
| ssb | Glaesserella parasuis strain SC1401 |
35.519 |
100 |
0.378 |