Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | EQI48_RS12500 | Genome accession | NZ_CP035164 |
| Coordinates | 2420107..2420442 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain SRCM104005 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2415107..2425442
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQI48_RS12480 (EQI48_12480) | gcvT | 2415700..2416788 (-) | 1089 | WP_015714248.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| EQI48_RS12485 (EQI48_12485) | hepAA | 2417229..2418902 (+) | 1674 | WP_029726726.1 | SNF2-related protein | - |
| EQI48_RS12490 (EQI48_12490) | yqhG | 2418923..2419717 (+) | 795 | WP_015714249.1 | YqhG family protein | - |
| EQI48_RS12495 (EQI48_12495) | sinI | 2419900..2420073 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| EQI48_RS12500 (EQI48_12500) | sinR | 2420107..2420442 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| EQI48_RS12505 (EQI48_12505) | tasA | 2420535..2421320 (-) | 786 | WP_014664586.1 | biofilm matrix protein TasA | - |
| EQI48_RS12510 (EQI48_12510) | sipW | 2421384..2421956 (-) | 573 | WP_072692741.1 | signal peptidase I SipW | - |
| EQI48_RS12515 (EQI48_12515) | tapA | 2421940..2422701 (-) | 762 | WP_029726724.1 | amyloid fiber anchoring/assembly protein TapA | - |
| EQI48_RS12520 (EQI48_12520) | yqzG | 2422973..2423299 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| EQI48_RS12525 (EQI48_12525) | spoIITA | 2423341..2423520 (-) | 180 | WP_029726723.1 | YqzE family protein | - |
| EQI48_RS12530 (EQI48_12530) | comGG | 2423592..2423966 (-) | 375 | WP_029726722.1 | ComG operon protein ComGG | Machinery gene |
| EQI48_RS12535 (EQI48_12535) | comGF | 2423967..2424350 (-) | 384 | WP_029726721.1 | ComG operon protein ComGF | Machinery gene |
| EQI48_RS12540 (EQI48_12540) | comGE | 2424376..2424723 (-) | 348 | WP_014480255.1 | ComG operon protein 5 | Machinery gene |
| EQI48_RS12545 (EQI48_12545) | comGD | 2424707..2425138 (-) | 432 | WP_029726720.1 | comG operon protein ComGD | Machinery gene |
| EQI48_RS12550 (EQI48_12550) | comGC | 2425128..2425424 (-) | 297 | WP_029726719.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=335198 EQI48_RS12500 WP_003226345.1 2420107..2420442(+) (sinR) [Bacillus subtilis strain SRCM104005]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=335198 EQI48_RS12500 WP_003226345.1 2420107..2420442(+) (sinR) [Bacillus subtilis strain SRCM104005]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |