Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EQH95_RS22415 Genome accession   NZ_CP035162
Coordinates   4187705..4188223 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM103886     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4187705..4198858 4187705..4188223 within 0


Gene organization within MGE regions


Location: 4187705..4198858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH95_RS22415 (EQH95_22415) ssbA 4187705..4188223 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  EQH95_RS22420 (EQH95_22420) rpsF 4188264..4188551 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  EQH95_RS22425 (EQH95_22425) ychF 4188662..4189762 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  EQH95_RS22430 (EQH95_22430) yyaE 4189889..4191892 (-) 2004 WP_069837910.1 molybdopterin-dependent oxidoreductase -
  EQH95_RS22435 (EQH95_22435) yyzM 4191943..4192149 (-) 207 WP_003226838.1 DUF951 family protein -
  EQH95_RS22440 (EQH95_22440) - 4192243..4193259 (-) 1017 WP_010886647.1 membrane protein -
  EQH95_RS22445 (EQH95_22445) yyaC 4193719..4194336 (+) 618 WP_003243890.1 spore protease YyaC -
  EQH95_RS22450 (EQH95_22450) - 4194453..4195603 (+) 1151 WP_087614170.1 IS3 family transposase -
  EQH95_RS22455 (EQH95_22455) spo0J 4195666..4196514 (-) 849 WP_003226832.1 stage 0 sporulation protein Spo0J -
  EQH95_RS22460 (EQH95_22460) soj 4196507..4197268 (-) 762 WP_003219244.1 sporulation initiation inhibitor protein Soj -
  EQH95_RS22465 (EQH95_22465) yyaB 4197516..4197956 (+) 441 WP_014481510.1 PH domain-containing protein -
  EQH95_RS22470 (EQH95_22470) noc 4198007..4198858 (-) 852 WP_003226829.1 nucleoid occlusion protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=335077 EQH95_RS22415 WP_003219228.1 4187705..4188223(-) (ssbA) [Bacillus subtilis strain SRCM103886]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=335077 EQH95_RS22415 WP_003219228.1 4187705..4188223(-) (ssbA) [Bacillus subtilis strain SRCM103886]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment