Detailed information
Bioinformatically predicted
Overview
| Name | comYF | Type | Machinery gene |
| Locus tag | SEQ_RS00690 | Genome accession | NC_012471 |
| Coordinates | 121950..122384 (+) | Length | 144 a.a. |
| NCBI ID | WP_012678814.1 | Uniprot ID | - |
| Organism | Streptococcus equi subsp. equi 4047 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IScluster/Tn | 122790..128047 | 121950..122384 | flank | 406 |
Gene organization within MGE regions
Location: 121950..128047
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SEQ_RS00690 (SEQ_0112) | comYF | 121950..122384 (+) | 435 | WP_012678814.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SEQ_RS00695 (SEQ_0113) | comGG | 122362..122724 (+) | 363 | WP_012678815.1 | competence type IV pilus minor pilin ComGG | - |
| SEQ_RS11470 (SEQ_0115) | - | 122790..124132 (+) | 1343 | Protein_108 | IS3 family transposase | - |
| SEQ_RS00710 (SEQ_0117) | comYH | 124217..125170 (+) | 954 | WP_012678816.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SEQ_RS00715 (SEQ_0118) | - | 125230..126429 (+) | 1200 | WP_012678817.1 | acetate kinase | - |
| SEQ_RS11095 | - | 126696..128047 (+) | 1352 | WP_173292351.1 | IS3 family transposase | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 16152.66 Da Isoelectric Point: 10.3349
>NTDB_id=33500 SEQ_RS00690 WP_012678814.1 121950..122384(+) (comYF) [Streptococcus equi subsp. equi 4047]
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMANERYLAANDQNNWLLFSQQLRAELSGTTLQGVRNNRLYVEKDK
KALSFGQVKGHDFRKAASNGQGYQPMLFGLSSSQITAVGQQVTIKLKWQSGLERTFIYAFQEKG
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMANERYLAANDQNNWLLFSQQLRAELSGTTLQGVRNNRLYVEKDK
KALSFGQVKGHDFRKAASNGQGYQPMLFGLSSSQITAVGQQVTIKLKWQSGLERTFIYAFQEKG
Nucleotide
Download Length: 435 bp
>NTDB_id=33500 SEQ_RS00690 WP_012678814.1 121950..122384(+) (comYF) [Streptococcus equi subsp. equi 4047]
TTGAAAGACAGTAGGCTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGCAAATGAGAGGTATCTAGCAGCAAATGATCAGAACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCCTACAGGGTGTCCGCAATAATAGGCTATATGTTGAAAAGGACAAG
AAGGCTTTGTCCTTTGGACAGGTCAAGGGCCATGATTTTAGAAAAGCAGCTAGCAATGGTCAAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTGACCATCAAGCTGAAATGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA
TTGAAAGACAGTAGGCTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGCAAATGAGAGGTATCTAGCAGCAAATGATCAGAACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCCTACAGGGTGTCCGCAATAATAGGCTATATGTTGAAAAGGACAAG
AAGGCTTTGTCCTTTGGACAGGTCAAGGGCCATGATTTTAGAAAAGCAGCTAGCAATGGTCAAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTGACCATCAAGCTGAAATGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYF | Streptococcus mutans UA140 |
52.448 |
99.306 |
0.521 |
| comYF | Streptococcus mutans UA159 |
51.748 |
99.306 |
0.514 |
| comGF/cglF | Streptococcus mitis SK321 |
48.905 |
95.139 |
0.465 |
| comGF | Lactococcus lactis subsp. cremoris KW2 |
47.482 |
96.528 |
0.458 |
| comGF/cglF | Streptococcus mitis NCTC 12261 |
48.175 |
95.139 |
0.458 |
| comGF/cglF | Streptococcus pneumoniae Rx1 |
46.715 |
95.139 |
0.444 |
| comGF/cglF | Streptococcus pneumoniae D39 |
46.715 |
95.139 |
0.444 |
| comGF/cglF | Streptococcus pneumoniae R6 |
46.715 |
95.139 |
0.444 |
| comGF/cglF | Streptococcus pneumoniae TIGR4 |
46.715 |
95.139 |
0.444 |