Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   SEQ_RS00710 Genome accession   NC_012471
Coordinates   124217..125170 (+) Length   317 a.a.
NCBI ID   WP_012678816.1    Uniprot ID   C0M6G9
Organism   Streptococcus equi subsp. equi 4047     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 122790..128047 124217..125170 within 0


Gene organization within MGE regions


Location: 122790..128047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEQ_RS11470 (SEQ_0115) - 122790..124132 (+) 1343 Protein_108 IS3 family transposase -
  SEQ_RS00710 (SEQ_0117) comYH 124217..125170 (+) 954 WP_012678816.1 class I SAM-dependent methyltransferase Machinery gene
  SEQ_RS00715 (SEQ_0118) - 125230..126429 (+) 1200 WP_012678817.1 acetate kinase -
  SEQ_RS11095 - 126696..128047 (+) 1352 WP_173292351.1 IS3 family transposase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35750.77 Da        Isoelectric Point: 4.6973

>NTDB_id=33501 SEQ_RS00710 WP_012678816.1 124217..125170(+) (comYH) [Streptococcus equi subsp. equi 4047]
MNFEKIEQAYELILENSQLIENDLKTHIYDAIVEQNSFYLGAQGASPQVAKNIETLKALQLTKEEWRQAYQFVLIKAGKT
EPLQANHQFTPDAIGFIMLYILETLSSQESLDVLEIGSGTGNLAQTILNHSHKSIDYLGIELDDLLIDLSASIAEIMGSS
AQFIQEDAIRPQLLKESDLIISDLPVGFYPNDDIASRYQVASSDEHTYAHHLLMEQALKYLKKDGFAIFLAPVNLLSSPQ
SHLLKQWLKGYAQVVALITLPEAVFGNPANAKSIIVLCKQSNRFAETFVYPIRDLKSVDNVRDFMENFKNWKRDNVI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=33501 SEQ_RS00710 WP_012678816.1 124217..125170(+) (comYH) [Streptococcus equi subsp. equi 4047]
ATGAATTTTGAAAAGATTGAACAAGCCTATGAGCTTATATTAGAAAATAGCCAGCTGATTGAAAATGATTTAAAAACGCA
TATCTATGATGCTATTGTTGAGCAGAATTCTTTTTATCTGGGAGCCCAAGGAGCAAGCCCTCAGGTTGCTAAAAATATTG
AGACGTTGAAGGCCTTGCAGTTAACCAAGGAGGAGTGGCGCCAGGCTTATCAGTTTGTTTTGATCAAGGCTGGGAAAACA
GAGCCATTACAGGCCAACCACCAATTTACCCCAGACGCGATCGGCTTTATCATGCTTTATATTTTGGAGACCTTGAGCTC
ACAAGAGTCACTTGATGTGCTTGAGATTGGCAGTGGAACAGGTAATTTAGCTCAAACTATTTTAAACCACTCACATAAGA
GCATTGATTATTTAGGCATTGAGCTTGATGATTTACTAATTGATCTATCAGCTAGTATCGCTGAAATCATGGGGTCATCA
GCCCAGTTTATTCAAGAGGATGCTATCAGACCTCAGCTGTTAAAAGAAAGTGATCTCATCATTAGCGATTTGCCAGTTGG
TTTTTATCCTAACGACGATATTGCTAGCAGGTATCAGGTGGCTAGCTCAGATGAGCATACCTATGCCCATCATTTACTGA
TGGAGCAAGCCTTAAAGTACCTGAAAAAAGATGGCTTTGCTATTTTCTTAGCACCGGTAAATCTTTTGAGCAGCCCACAA
AGTCACCTCTTAAAACAATGGCTGAAGGGCTATGCTCAGGTTGTGGCCTTGATTACTTTGCCTGAGGCTGTGTTTGGAAA
TCCAGCTAATGCAAAATCGATTATTGTTCTTTGTAAGCAATCGAATCGCTTTGCAGAAACCTTTGTTTACCCCATTAGGG
ATTTGAAATCTGTTGATAATGTTCGTGATTTTATGGAAAACTTCAAAAATTGGAAACGGGATAATGTTATTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0M6G9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

63.291

99.685

0.631
  comYH Streptococcus mutans UA140

63.291

99.685

0.631

Multiple sequence alignment