Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EQH88_RS21520 Genome accession   NZ_CP035161
Coordinates   4116096..4116614 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM103862     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4111096..4121614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH88_RS21490 (EQH88_21490) yyaJ 4111600..4112955 (+) 1356 WP_029318525.1 MFS transporter -
  EQH88_RS21495 (EQH88_21495) maa 4112989..4113543 (-) 555 WP_003226849.1 sugar O-acetyltransferase -
  EQH88_RS21500 (EQH88_21500) yyaH 4113561..4113941 (-) 381 WP_128422534.1 VOC family protein -
  EQH88_RS21505 (EQH88_21505) ccpB 4113997..4114932 (-) 936 Protein_4166 transcriptional regulator CcpB -
  EQH88_RS21510 (EQH88_21510) xth 4114991..4115749 (-) 759 WP_029726087.1 exodeoxyribonuclease III -
  EQH88_RS21515 (EQH88_21515) rpsR 4115813..4116052 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  EQH88_RS21520 (EQH88_21520) ssbA 4116096..4116614 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  EQH88_RS21525 (EQH88_21525) rpsF 4116655..4116942 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  EQH88_RS21530 (EQH88_21530) ychF 4117053..4118153 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  EQH88_RS21535 (EQH88_21535) yyaE 4118280..4120283 (-) 2004 WP_128480857.1 molybdopterin-dependent oxidoreductase -
  EQH88_RS21540 (EQH88_21540) yyzM 4120334..4120540 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=334998 EQH88_RS21520 WP_003219228.1 4116096..4116614(-) (ssbA) [Bacillus subtilis strain SRCM103862]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=334998 EQH88_RS21520 WP_003219228.1 4116096..4116614(-) (ssbA) [Bacillus subtilis strain SRCM103862]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment