Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   EQH88_RS06035 Genome accession   NZ_CP035161
Coordinates   1136247..1136825 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103862     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1131247..1141825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH88_RS06015 (EQH88_06015) hemAT 1131758..1133056 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  EQH88_RS06020 (EQH88_06020) comW 1133195..1134724 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  EQH88_RS06025 (EQH88_06025) yhxC 1134836..1135693 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  EQH88_RS06030 (EQH88_06030) yhzC 1135721..1135954 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  EQH88_RS06035 (EQH88_06035) comK 1136247..1136825 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  EQH88_RS06040 (EQH88_06040) yhxD 1136872..1137771 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  EQH88_RS06045 (EQH88_06045) yhjA 1137988..1138257 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  EQH88_RS06050 (EQH88_06050) yhjB 1138301..1139770 (-) 1470 WP_029726292.1 sodium:solute symporter -
  EQH88_RS06055 (EQH88_06055) yhjC 1139767..1139967 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  EQH88_RS06060 (EQH88_06060) - 1140175..1140537 (-) 363 WP_003233132.1 hypothetical protein -
  EQH88_RS06065 (EQH88_06065) yhjE 1140689..1141312 (+) 624 WP_010886465.1 VTT domain-containing protein -
  EQH88_RS06070 (EQH88_06070) lepB 1141314..1141820 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=334938 EQH88_RS06035 WP_029317573.1 1136247..1136825(+) (comK) [Bacillus subtilis strain SRCM103862]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=334938 EQH88_RS06035 WP_029317573.1 1136247..1136825(+) (comK) [Bacillus subtilis strain SRCM103862]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment