Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   SZO_RS03280 Genome accession   NC_012470
Coordinates   696442..697164 (+) Length   240 a.a.
NCBI ID   WP_012677660.1    Uniprot ID   A0AAW3GL08
Organism   Streptococcus equi subsp. zooepidemicus     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 691442..702164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SZO_RS03260 (SZO_05970) - 692751..694172 (+) 1422 WP_012515972.1 glycoside hydrolase family 1 protein -
  SZO_RS03265 (SZO_05980) - 694357..695172 (-) 816 WP_041790368.1 TIGR03943 family putative permease subunit -
  SZO_RS03270 (SZO_05990) - 695172..696074 (-) 903 WP_012677658.1 permease -
  SZO_RS10615 (SZO_06000) - 696115..696270 (-) 156 WP_012515968.1 SPJ_0845 family protein -
  SZO_RS03280 (SZO_06010) vicR 696442..697164 (+) 723 WP_012677660.1 response regulator transcription factor Regulator
  SZO_RS03285 (SZO_06020) pnpS 697148..698473 (+) 1326 WP_012677661.1 two-component system histidine kinase PnpS -
  SZO_RS03290 (SZO_06030) - 698632..699504 (+) 873 WP_041790370.1 substrate-binding domain-containing protein -
  SZO_RS03295 (SZO_06040) pstC 699574..700437 (+) 864 WP_012677663.1 phosphate ABC transporter permease subunit PstC -
  SZO_RS03300 (SZO_06050) pstA 700430..701245 (+) 816 WP_012677664.1 phosphate ABC transporter permease PstA -
  SZO_RS03305 (SZO_06060) pstB 701247..701999 (+) 753 WP_012677665.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28111.54 Da        Isoelectric Point: 6.1653

>NTDB_id=33467 SZO_RS03280 WP_012677660.1 696442..697164(+) (vicR) [Streptococcus equi subsp. zooepidemicus]
MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRAKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=33467 SZO_RS03280 WP_012677660.1 696442..697164(+) (vicR) [Streptococcus equi subsp. zooepidemicus]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAGGCTACTGGATTATCACTTGGCCAAGGAGGGCTT
TGTGACAGAGATGGTAACAGATGGCCGTACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTGCTAAGGGAAGCAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAACTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGCACTGAAGCAGAGATTTCTGGTGATGGTGAGGAGCGTCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCGTTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCTTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATTGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGATACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

50

95.833

0.479
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.017

97.5

0.429
  covR Streptococcus salivarius strain HSISS4

40.773

97.083

0.396

Multiple sequence alignment