Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EQK21_RS07785 Genome accession   NZ_CP035110
Coordinates   1551663..1552997 (-) Length   444 a.a.
NCBI ID   WP_241653695.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain SRCM103465     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1546663..1557997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK21_RS07770 (EQK21_07770) secA 1547726..1550089 (-) 2364 WP_004270228.1 preprotein translocase subunit SecA -
  EQK21_RS07775 (EQK21_07775) raiA 1550318..1550863 (-) 546 WP_004270226.1 ribosome-associated translation inhibitor RaiA -
  EQK21_RS07780 (EQK21_07780) comFC 1550989..1551519 (-) 531 WP_148484979.1 ComF family protein Machinery gene
  EQK21_RS07785 (EQK21_07785) comFA 1551663..1552997 (-) 1335 WP_241653695.1 DEAD/DEAH box helicase Machinery gene
  EQK21_RS07790 (EQK21_07790) - 1553054..1553716 (+) 663 WP_128530816.1 YigZ family protein -
  EQK21_RS07795 (EQK21_07795) - 1553741..1554829 (-) 1089 WP_004270225.1 MraY family glycosyltransferase -
  EQK21_RS07800 (EQK21_07800) hemH 1554939..1555880 (-) 942 WP_128530817.1 ferrochelatase -
  EQK21_RS07805 (EQK21_07805) rny 1555973..1557535 (-) 1563 WP_004270250.1 ribonuclease Y -

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 49761.88 Da        Isoelectric Point: 9.4675

>NTDB_id=334605 EQK21_RS07785 WP_241653695.1 1551663..1552997(-) (comFA) [Latilactobacillus curvatus strain SRCM103465]
MMAKQLAYGRQWSATQLSTVMNNYSLPQIKQRPAFQIVNQRLVCQRCGQVVKEQARLPDGRYYCAACLTFGRLVEGDQLI
YVPECNLFESIVEPLTWSGTLTPFQAQAAKQIVAVITKQQRHVLTAVTGAGKTEMLFQGIATALANGQRVCVAAPRVAVC
LELYPRLQAAFANTPIMLMHGEQTAPYQYTPLVVCTTHQLFKFYQAFDTVIVDEVDAFPFVNNPQLEMAVKQACKPCCAL
IYLTATPTVKLRHAINTGDLTGSELPIRFHGHLLPEPHCYPLFTWRRSVKRHQLPSVMRNLLRKCLQEQRLLLFVPQVRD
LEAVQQSVVRALPHITVNTVHAGDPNQLDKIAAFRAGSGDVLITTTVLERGVTFKNIAVFVLGAEHVVFTESVLVQIAGR
AGRQQEHAANPVYFFYADYTVAIQRACQQIKRQNRKGRRLQSTV

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=334605 EQK21_RS07785 WP_241653695.1 1551663..1552997(-) (comFA) [Latilactobacillus curvatus strain SRCM103465]
ATGATGGCAAAACAACTTGCTTATGGTCGTCAGTGGAGTGCCACCCAATTGAGTACCGTTATGAATAATTATAGTTTACC
ACAGATTAAACAGCGACCAGCGTTTCAAATAGTTAATCAGCGTCTGGTGTGTCAACGGTGTGGACAAGTGGTGAAAGAGC
AAGCTCGCTTACCTGATGGGCGGTATTATTGTGCTGCTTGCTTGACCTTTGGGCGGTTAGTGGAAGGGGATCAGTTGATT
TACGTGCCTGAATGCAATCTGTTTGAGTCGATTGTAGAACCGCTAACTTGGTCGGGGACACTAACCCCTTTTCAAGCACA
AGCCGCAAAGCAGATTGTTGCGGTCATTACCAAGCAACAACGCCATGTCTTAACTGCAGTGACCGGTGCTGGTAAAACTG
AGATGTTATTTCAAGGCATTGCGACGGCTTTGGCTAATGGGCAGCGTGTGTGTGTTGCTGCGCCGCGGGTGGCGGTTTGT
TTAGAACTCTATCCGCGCTTGCAAGCAGCGTTTGCTAACACACCAATCATGCTGATGCATGGGGAACAGACTGCGCCTTA
CCAGTATACGCCGTTAGTTGTTTGTACAACCCATCAGTTATTTAAGTTTTATCAGGCATTTGACACCGTCATTGTCGATG
AGGTTGATGCGTTCCCATTTGTCAATAATCCCCAGCTTGAGATGGCTGTTAAACAGGCGTGTAAGCCATGCTGTGCATTA
ATCTATCTGACGGCGACGCCAACTGTAAAGTTGCGCCATGCGATTAATACGGGGGATTTAACGGGTAGTGAGCTACCAAT
TCGCTTTCATGGTCACTTATTACCTGAACCGCATTGCTATCCCTTGTTTACGTGGCGGCGTTCAGTTAAACGGCATCAGT
TACCATCCGTGATGCGCAACTTACTCAGAAAGTGTCTTCAAGAACAACGCTTATTATTATTTGTGCCACAGGTAAGGGAT
TTAGAGGCGGTTCAGCAGAGCGTTGTTCGGGCATTGCCACACATTACAGTGAACACGGTACATGCTGGCGATCCTAATCA
ATTAGACAAGATAGCGGCCTTTAGAGCAGGAAGCGGGGACGTGCTGATTACGACGACAGTTCTAGAACGAGGCGTAACGT
TTAAAAATATTGCAGTGTTTGTTCTTGGTGCAGAACACGTGGTTTTCACTGAATCAGTGCTTGTACAGATTGCTGGCCGA
GCCGGACGACAGCAAGAGCATGCTGCCAATCCGGTTTATTTTTTCTACGCGGATTACACGGTCGCTATTCAGCGTGCGTG
TCAACAAATTAAACGACAAAATCGAAAAGGACGGCGATTACAATCCACTGTTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(101-248)

Helicase conserved C-terminal domain (Helicase_C)

(298-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Latilactobacillus sakei subsp. sakei 23K

65.682

99.099

0.651
  comFA/cflA Streptococcus mitis NCTC 12261

40.488

92.342

0.374
  comFA/cflA Streptococcus pneumoniae TIGR4

40.291

92.793

0.374
  comFA/cflA Streptococcus pneumoniae Rx1

40.049

92.793

0.372
  comFA/cflA Streptococcus pneumoniae D39

40.049

92.793

0.372
  comFA/cflA Streptococcus pneumoniae R6

40.049

92.793

0.372
  comFA/cflA Streptococcus mitis SK321

39.806

92.793

0.369
  comFA Bacillus subtilis subsp. subtilis str. 168

37.762

96.622

0.365

Multiple sequence alignment