Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SZO_RS01580 Genome accession   NC_012470
Coordinates   333265..334191 (+) Length   308 a.a.
NCBI ID   WP_012677390.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 328265..339191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SZO_RS01570 (SZO_02770) amiA3 329726..331702 (+) 1977 WP_041790312.1 peptide ABC transporter substrate-binding protein Regulator
  SZO_RS01575 (SZO_02780) amiC 331766..333265 (+) 1500 WP_012677389.1 ABC transporter permease Regulator
  SZO_RS01580 (SZO_02790) amiD 333265..334191 (+) 927 WP_012677390.1 oligopeptide ABC transporter permease OppC Regulator
  SZO_RS01585 (SZO_02800) amiE 334200..335270 (+) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  SZO_RS01590 (SZO_02810) amiF 335263..336186 (+) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  SZO_RS01595 (SZO_02820) - 336584..337747 (-) 1164 WP_012677391.1 IS30-like element ISSeq6 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34560.47 Da        Isoelectric Point: 7.1547

>NTDB_id=33451 SZO_RS01580 WP_012677390.1 333265..334191(+) (amiD) [Streptococcus equi subsp. zooepidemicus]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTILMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVIVGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=33451 SZO_RS01580 WP_012677390.1 333265..334191(+) (amiD) [Streptococcus equi subsp. zooepidemicus]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTGGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTCTTTAGGCAATTCTTCTCACGTAAATCAACTATTTTGATGCTGGTTATTTTAATTGCTATTA
TTTTGATGAGCTTCATCTACCCTATGTTTGCCAACTATGACTTTGGTGACGTGAGCAATATTAATGATTTTTCAAAGCGT
TATATCGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATCTTAATTTCAGTTATTGCAACCATCATCAATATGATTATCGGAGTCATTGTCGGTGGTATTTGGGGTG
TTTCCAAAGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCATTATCATTGTG
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCTTTTTGTGTGACAGGCTGGATTGGAATTGCTTATTC
GATTCGTGTACAAATTTTGCGTTATCGTGATTTAGAATACAATTTAGCAAGTCAGACCTTAGGAACACCCACCCATAAAA
TTGTCATTAAAAATCTTTTACCTCAATTGGTTTCGGTGATCGTTTCAATGGTTTCCTTGCTATTGCCGTCCTATATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGCTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAACAATTTAACAACAAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCCTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.325

100

0.753
  amiD Streptococcus thermophilus LMG 18311

74.675

100

0.747
  amiD Streptococcus thermophilus LMD-9

74.675

100

0.747

Multiple sequence alignment