Detailed information NTG0033453

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: SZO_RS01590
• Genome accession: NC_012470
• Coordinates: 335263..336186 (+)
• Length: 307 a.a.
• NCBI ID: WP_012516278.1
• Uniprot ID: A0AAW3GKE0
• Organism: Streptococcus equi subsp. zooepidemicus
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	336584..337747	335263..336186	flank	398

Gene organization within MGE regions

Location: 335263..337747

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SZO_RS01590 (SZO_02810)	amiF	335263..336186 (+)	924	WP_012516278.1	ATP-binding cassette domain-containing protein	Regulator
SZO_RS01595 (SZO_02820)	-	336584..337747 (-)	1164	WP_012677391.1	IS30-like element ISSeq6 family transposase	-

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34670.89 Da
• Isoelectric Point: 6.9308

>NTDB_id=33453 SZO_RS01590 WP_012516278.1 335263..336186(+) (amiF) [Streptococcus equi subsp. zooepidemicus]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSSGEIRYDGKIINGKKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEDERKEKIKQMMSEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMDPEFVIADEPISALDVSVRAQVLNLLKKIQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFV
NPVHPYTKSLLSAVPIPDPILERQKKLVVYHPEQHDYSVDKPSMVEIKPNHFVWANQAEAERYRKEL

Nucleotide

• Length: 924 bp

>NTDB_id=33453 SZO_RS01590 WP_012516278.1 335263..336186(+) (amiF) [Streptococcus equi subsp. zooepidemicus]
ATGTCTGAAAAATTAGTTGAAGTAAAAGATCTGGAGATTTCCTTTGGAGAGGGAAAGAAAAAGTTTGTTGCCGTTAAAAA
TGCCAATTTCTTTATCAATAAAGGAGAAACCTTTTCTCTTGTTGGAGAATCAGGCAGCGGAAAGACAACAATAGGTCGTG
CTATCATTGGCTTAAATGAAACAAGCTCAGGCGAAATCCGCTACGACGGTAAGATTATTAATGGTAAAAAATCAAAATCT
GAAGCTAATGAACTGATTAGAAAAATCCAAATGATTTTTCAGGATCCAGCAGCCAGCCTGAATGAGCGTGCAACGGTTGA
TTATATCATCTCAGAAGGCCTTTATAATTTTAACCTATTCAAAACAGAAGACGAACGTAAAGAAAAAATTAAACAGATGA
TGTCAGAGGTGGGCTTGCTTGCAGAGCACCTGACACGCTACCCTCATGAGTTTTCAGGTGGGCAGCGTCAGCGTATAGGT
ATTGCAAGAGCGCTTGTAATGGATCCGGAGTTTGTTATTGCTGATGAGCCGATTTCAGCTCTTGATGTATCTGTTCGTGC
TCAGGTCTTGAACCTGTTGAAGAAAATACAGGCTGAAAAAGGCTTGACCTATTTATTCATTGCTCATGATTTATCAGTTG
TGCGTTTTATTTCAGATCGTATTGCTGTTATTCACAAAGGAGTAATTGTTGAAGTCGCCGAAACAGAAGAGCTTTTTGTT
AATCCTGTTCACCCTTATACCAAATCTCTGTTGTCAGCGGTACCAATTCCAGATCCCATTTTAGAGCGTCAAAAGAAATT
GGTGGTCTATCATCCAGAGCAGCATGACTATTCTGTTGACAAGCCATCAATGGTGGAAATCAAACCAAATCACTTCGTCT
GGGCTAACCAGGCGGAAGCGGAGCGTTACCGCAAAGAGCTTTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (25-178)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	83.007	99.674	0.827
amiF	Streptococcus thermophilus LMD-9	82.68	99.674	0.824
amiF	Streptococcus salivarius strain HSISS4	82.68	99.674	0.824