Detailed information NTG0334496

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: EM806_RS00735
• Genome accession: NZ_CP035106
• Coordinates: 153584..154720 (+)
• Length: 378 a.a.
• NCBI ID: WP_128479300.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpbs3
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 148584..159720

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EM806_RS00700	panD	149033..149383 (+)	351	WP_128479297.1	aspartate 1-decarboxylase	-
EM806_RS00705	-	149394..149687 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
EM806_RS00710	-	149687..150682 (+)	996	WP_128480354.1	PDZ domain-containing protein	-
EM806_RS00715	comB6	150690..151745 (+)	1056	WP_120930618.1	P-type conjugative transfer protein TrbL	Machinery gene
EM806_RS00720	comB7	151761..151886 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
EM806_RS00725	comB8	151883..152626 (+)	744	WP_128018270.1	virB8 family protein	Machinery gene
EM806_RS00730	comB9	152626..153591 (+)	966	WP_128479298.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EM806_RS00735	comB10	153584..154720 (+)	1137	WP_128479300.1	DNA type IV secretion system protein ComB10	Machinery gene
EM806_RS00740	-	154786..156198 (+)	1413	WP_128479301.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
EM806_RS00745	gmd	156212..157357 (+)	1146	WP_128479303.1	GDP-mannose 4,6-dehydratase	-
EM806_RS00750	-	157350..158282 (+)	933	WP_128479304.1	GDP-L-fucose synthase	-
EM806_RS00755	hypE	158551..159549 (-)	999	WP_128479306.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42063.67 Da
• Isoelectric Point: 9.9837

>NTDB_id=334496 EM806_RS00735 WP_128479300.1 153584..154720(+) (comB10) [Helicobacter pylori strain Hpbs3]
MNKWIKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMSSSKEETFKSSLIDSKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=334496 EM806_RS00735 WP_128479300.1 153584..154720(+) (comB10) [Helicobacter pylori strain Hpbs3]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACCCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAATTCCAAAGAAATGAGCTCTTCTAAAGAAGAAACTTTTAAGAGCTCTCTCATAGATTCAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTTTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAATAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGGGGTAATAAAGAAGGAGTTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	94.974	100	0.95