Detailed information NTG0334492

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: EM806_RS00715
• Genome accession: NZ_CP035106
• Coordinates: 150690..151745 (+)
• Length: 351 a.a.
• NCBI ID: WP_120930618.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpbs3
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 145690..156745

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EM806_RS00680	-	145698..145964 (-)	267	WP_240669795.1	hypothetical protein	-
EM806_RS00685	-	146113..146526 (+)	414	WP_001023005.1	universal stress protein	-
EM806_RS00690	-	146546..146821 (+)	276	WP_031249416.1	ATP-dependent Clp protease adaptor ClpS	-
EM806_RS00695	-	146821..149043 (+)	2223	WP_128479295.1	ATP-dependent Clp protease ATP-binding subunit	-
EM806_RS00700	panD	149033..149383 (+)	351	WP_128479297.1	aspartate 1-decarboxylase	-
EM806_RS00705	-	149394..149687 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
EM806_RS00710	-	149687..150682 (+)	996	WP_128480354.1	PDZ domain-containing protein	-
EM806_RS00715	comB6	150690..151745 (+)	1056	WP_120930618.1	P-type conjugative transfer protein TrbL	Machinery gene
EM806_RS00720	comB7	151761..151886 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
EM806_RS00725	comB8	151883..152626 (+)	744	WP_128018270.1	virB8 family protein	Machinery gene
EM806_RS00730	comB9	152626..153591 (+)	966	WP_128479298.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EM806_RS00735	comB10	153584..154720 (+)	1137	WP_128479300.1	DNA type IV secretion system protein ComB10	Machinery gene
EM806_RS00740	-	154786..156198 (+)	1413	WP_128479301.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39692.63 Da
• Isoelectric Point: 8.8165

>NTDB_id=334492 EM806_RS00715 WP_120930618.1 150690..151745(+) (comB6) [Helicobacter pylori strain Hpbs3]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSASGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=334492 EM806_RS00715 WP_120930618.1 150690..151745(+) (comB6) [Helicobacter pylori strain Hpbs3]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGCTAGTGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAATTTTTCTAATCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGTCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTGCAAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.436	100	0.974