Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   EM806_RS00725 Genome accession   NZ_CP035106
Coordinates   151883..152626 (+) Length   247 a.a.
NCBI ID   WP_128018270.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs3     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 146883..157626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM806_RS00700 panD 149033..149383 (+) 351 WP_128479297.1 aspartate 1-decarboxylase -
  EM806_RS00705 - 149394..149687 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  EM806_RS00710 - 149687..150682 (+) 996 WP_128480354.1 PDZ domain-containing protein -
  EM806_RS00715 comB6 150690..151745 (+) 1056 WP_120930618.1 P-type conjugative transfer protein TrbL Machinery gene
  EM806_RS00720 comB7 151761..151886 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  EM806_RS00725 comB8 151883..152626 (+) 744 WP_128018270.1 virB8 family protein Machinery gene
  EM806_RS00730 comB9 152626..153591 (+) 966 WP_128479298.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  EM806_RS00735 comB10 153584..154720 (+) 1137 WP_128479300.1 DNA type IV secretion system protein ComB10 Machinery gene
  EM806_RS00740 - 154786..156198 (+) 1413 WP_128479301.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  EM806_RS00745 gmd 156212..157357 (+) 1146 WP_128479303.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28698.94 Da        Isoelectric Point: 8.9546

>NTDB_id=334494 EM806_RS00725 WP_128018270.1 151883..152626(+) (comB8) [Helicobacter pylori strain Hpbs3]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=334494 EM806_RS00725 WP_128018270.1 151883..152626(+) (comB8) [Helicobacter pylori strain Hpbs3]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTATCTTAGCGATTGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976

Multiple sequence alignment