Detailed information NTG0334475

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: EM803_RS00770
• Genome accession: NZ_CP035105
• Coordinates: 153829..154965 (+)
• Length: 378 a.a.
• NCBI ID: WP_128480959.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpbs2
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 148829..159965

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EM803_RS00735	panD	149272..149622 (+)	351	WP_000142212.1	aspartate 1-decarboxylase	-
EM803_RS00740	-	149633..149926 (+)	294	WP_128480957.1	YbaB/EbfC family nucleoid-associated protein	-
EM803_RS00745	-	149926..150921 (+)	996	WP_128481772.1	PDZ domain-containing protein	-
EM803_RS00750	comB6	150929..151984 (+)	1056	WP_128481771.1	P-type conjugative transfer protein TrbL	Machinery gene
EM803_RS00755	comB7	152000..152125 (+)	126	WP_075668089.1	comB7 lipoprotein	Machinery gene
EM803_RS00760	comB8	152122..152865 (+)	744	WP_000660524.1	virB8 family protein	Machinery gene
EM803_RS00765	comB9	152865..153836 (+)	972	WP_128480958.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EM803_RS00770	comB10	153829..154965 (+)	1137	WP_128480959.1	DNA type IV secretion system protein ComB10	Machinery gene
EM803_RS00775	-	155035..156447 (+)	1413	WP_128480960.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
EM803_RS00780	gmd	156462..157607 (+)	1146	WP_031214491.1	GDP-mannose 4,6-dehydratase	-
EM803_RS00785	-	157600..158532 (+)	933	WP_001002433.1	GDP-L-fucose synthase	-
EM803_RS00790	hypE	158758..159756 (-)	999	WP_128480961.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42049.58 Da
• Isoelectric Point: 9.8542

>NTDB_id=334475 EM803_RS00770 WP_128480959.1 153829..154965(+) (comB10) [Helicobacter pylori strain Hpbs2]
MNKWIKGVLVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEINSSKEETFTSPPIDLKTNTTSPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=334475 EM803_RS00770 WP_128480959.1 153829..154965(+) (comB10) [Helicobacter pylori strain Hpbs2]
ATGAATAAGTGGATTAAGGGGGTGCTTGTTTTTGTGGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGATGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATAAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCTCTCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTATTAGCCTCTCGCATCACCCCTTTTAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAGATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATTGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTGTTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	94.709	100	0.947