Detailed information NTG0334471

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: EM803_RS00750
• Genome accession: NZ_CP035105
• Coordinates: 150929..151984 (+)
• Length: 351 a.a.
• NCBI ID: WP_128481771.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpbs2
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 145929..156984

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EM803_RS00720	-	146358..146771 (+)	414	WP_120871873.1	universal stress protein	-
EM803_RS00725	-	146785..147060 (+)	276	WP_128481770.1	ATP-dependent Clp protease adaptor ClpS	-
EM803_RS00730	-	147060..149282 (+)	2223	WP_128480956.1	ATP-dependent Clp protease ATP-binding subunit	-
EM803_RS00735	panD	149272..149622 (+)	351	WP_000142212.1	aspartate 1-decarboxylase	-
EM803_RS00740	-	149633..149926 (+)	294	WP_128480957.1	YbaB/EbfC family nucleoid-associated protein	-
EM803_RS00745	-	149926..150921 (+)	996	WP_128481772.1	PDZ domain-containing protein	-
EM803_RS00750	comB6	150929..151984 (+)	1056	WP_128481771.1	P-type conjugative transfer protein TrbL	Machinery gene
EM803_RS00755	comB7	152000..152125 (+)	126	WP_075668089.1	comB7 lipoprotein	Machinery gene
EM803_RS00760	comB8	152122..152865 (+)	744	WP_000660524.1	virB8 family protein	Machinery gene
EM803_RS00765	comB9	152865..153836 (+)	972	WP_128480958.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EM803_RS00770	comB10	153829..154965 (+)	1137	WP_128480959.1	DNA type IV secretion system protein ComB10	Machinery gene
EM803_RS00775	-	155035..156447 (+)	1413	WP_128480960.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39781.69 Da
• Isoelectric Point: 8.8165

>NTDB_id=334471 EM803_RS00750 WP_128481771.1 150929..151984(+) (comB6) [Helicobacter pylori strain Hpbs2]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNLITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKEAYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNET

Nucleotide

• Length: 1056 bp

>NTDB_id=334471 EM803_RS00750 WP_128481771.1 150929..151984(+) (comB6) [Helicobacter pylori strain Hpbs2]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTTTTCAGCGCTAGTGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACTTGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGTTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATTAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAGCTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAACTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.429	99.715	0.972