Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FXN57_RS02910 Genome accession   NZ_CP043005
Coordinates   550712..551323 (-) Length   203 a.a.
NCBI ID   WP_392388679.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain PN_696     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 545712..556323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN57_RS02900 (FXN57_02895) - 548270..549115 (+) 846 WP_053330008.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  FXN57_RS02905 (FXN57_02900) gorA 549210..550580 (+) 1371 WP_148323797.1 glutathione-disulfide reductase -
  FXN57_RS02910 (FXN57_02905) crp 550712..551323 (-) 612 WP_392388679.1 cAMP-activated global transcriptional regulator CRP Regulator
  FXN57_RS02915 (FXN57_02910) - 551394..551612 (-) 219 WP_005540236.1 YheU family protein -
  FXN57_RS02920 (FXN57_02915) slmA 551636..552235 (-) 600 WP_005540234.1 nucleoid occlusion factor SlmA -
  FXN57_RS02925 (FXN57_02920) dut 552235..552690 (-) 456 WP_005544956.1 dUTP diphosphatase -
  FXN57_RS02930 (FXN57_02925) coaBC 552759..553958 (-) 1200 WP_005562040.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  FXN57_RS02935 (FXN57_02930) radC 554136..554762 (+) 627 WP_148363150.1 DNA repair protein RadC Machinery gene
  FXN57_RS02940 (FXN57_02935) rpmB 554970..555206 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  FXN57_RS02945 (FXN57_02940) rpmG 555218..555388 (+) 171 WP_005544948.1 50S ribosomal protein L33 -
  FXN57_RS02950 (FXN57_02945) mutM 555471..556286 (+) 816 WP_148363151.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23044.61 Da        Isoelectric Point: 7.8328

>NTDB_id=334196 FXN57_RS02910 WP_392388679.1 550712..551323(-) (crp) [Aggregatibacter actinomycetemcomitans strain PN_696]
MDPTLEWFLSHCHIHKYPSKSTLINASEKAETLYYLIQGSVSVLVKDEDGKEMILTYLSQGDFFGEAGLFEEGQRRSAWI
KAKSSCEVAEISYRKFRQLIQVNPEILMYLTAQLAYRLQNTSRQVSNLAFLDVTGRIAQTLLNLAKMPEAMTHPDGMQIK
ITRQEIGQMVGCSRETVGRILKMLEDQHLISAHGKTIVVYGTR

Nucleotide


Download         Length: 612 bp        

>NTDB_id=334196 FXN57_RS02910 WP_392388679.1 550712..551323(-) (crp) [Aggregatibacter actinomycetemcomitans strain PN_696]
ATGGATCCGACACTTGAGTGGTTTTTATCCCACTGCCATATCCATAAATATCCGTCTAAAAGCACATTAATCAACGCCAG
CGAAAAAGCCGAGACACTTTATTATTTAATTCAAGGCTCCGTGTCCGTTTTGGTCAAAGACGAAGACGGCAAAGAAATGA
TCCTCACCTATTTAAGCCAAGGGGATTTTTTCGGCGAAGCGGGCTTATTTGAAGAAGGACAACGTCGTTCTGCGTGGATT
AAAGCAAAATCCTCCTGTGAAGTGGCGGAAATTTCTTATCGTAAATTTCGCCAGCTGATTCAAGTCAACCCTGAGATTCT
GATGTATCTTACGGCCCAATTAGCGTATCGGTTACAAAACACTTCGCGCCAAGTAAGTAATTTAGCCTTTTTAGATGTCA
CCGGTCGCATTGCGCAAACCTTGCTCAATCTGGCAAAAATGCCGGAAGCGATGACTCACCCGGACGGTATGCAAATTAAA
ATCACCCGCCAGGAAATCGGACAAATGGTCGGTTGTTCGCGGGAAACCGTCGGGCGTATTCTGAAAATGCTGGAAGATCA
ACACCTCATCTCGGCACACGGCAAAACCATCGTAGTTTACGGCACCCGCTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(16-102)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(135-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

81.683

99.507

0.813
  crp Haemophilus influenzae Rd KW20

80.198

99.507

0.798
  crp Acinetobacter baumannii D1279779

46.734

98.03

0.458

Multiple sequence alignment