Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FXN57_RS02935 Genome accession   NZ_CP043005
Coordinates   554136..554762 (+) Length   208 a.a.
NCBI ID   WP_148363150.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain PN_696     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 549136..559762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN57_RS02905 (FXN57_02900) gorA 549210..550580 (+) 1371 WP_148323797.1 glutathione-disulfide reductase -
  FXN57_RS02910 (FXN57_02905) crp 550712..551323 (-) 612 WP_392388679.1 cAMP-activated global transcriptional regulator CRP Regulator
  FXN57_RS02915 (FXN57_02910) - 551394..551612 (-) 219 WP_005540236.1 YheU family protein -
  FXN57_RS02920 (FXN57_02915) slmA 551636..552235 (-) 600 WP_005540234.1 nucleoid occlusion factor SlmA -
  FXN57_RS02925 (FXN57_02920) dut 552235..552690 (-) 456 WP_005544956.1 dUTP diphosphatase -
  FXN57_RS02930 (FXN57_02925) coaBC 552759..553958 (-) 1200 WP_005562040.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  FXN57_RS02935 (FXN57_02930) radC 554136..554762 (+) 627 WP_148363150.1 DNA repair protein RadC Machinery gene
  FXN57_RS02940 (FXN57_02935) rpmB 554970..555206 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  FXN57_RS02945 (FXN57_02940) rpmG 555218..555388 (+) 171 WP_005544948.1 50S ribosomal protein L33 -
  FXN57_RS02950 (FXN57_02945) mutM 555471..556286 (+) 816 WP_148363151.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  FXN57_RS02955 (FXN57_02950) - 556289..557341 (-) 1053 WP_148323807.1 glycosyltransferase family 9 protein -
  FXN57_RS02960 (FXN57_02955) - 557351..558373 (-) 1023 WP_148323809.1 glycosyltransferase family 9 protein -
  FXN57_RS02965 (FXN57_02960) - 558374..559066 (-) 693 WP_148327215.1 glycosyltransferase family 25 protein -
  FXN57_RS02970 (FXN57_02965) rpmE 559129..559341 (-) 213 WP_005542845.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23782.64 Da        Isoelectric Point: 6.6351

>NTDB_id=334197 FXN57_RS02935 WP_148363150.1 554136..554762(+) (radC) [Aggregatibacter actinomycetemcomitans strain PN_696]
MNEALMPREKLLKYGAAALTDDELLAIFLRTGIKDCPVMQLSKNVLQHFGSLRELISANQKQFIQLQACTEMTRRYLFAE
LKETHCFTSPDIVKMYLQTELANTEREIFMVLFLDNQHRLIKQERLFLGTINKAMVYPREIIKEALACNAAAIILAYNHP
SGVAEPSISDKQITDTIRQAADLVDIRVLDHFVIGNGRYFSFSEQNLL

Nucleotide


Download         Length: 627 bp        

>NTDB_id=334197 FXN57_RS02935 WP_148363150.1 554136..554762(+) (radC) [Aggregatibacter actinomycetemcomitans strain PN_696]
ATGAATGAAGCATTAATGCCAAGGGAAAAGCTATTAAAATACGGTGCTGCCGCTTTGACGGACGATGAACTATTGGCGAT
CTTTTTGCGTACGGGAATTAAGGACTGCCCGGTGATGCAGTTATCGAAAAATGTGCTACAACATTTCGGTTCGTTACGTG
AATTGATTAGCGCCAATCAAAAGCAGTTTATTCAGCTGCAAGCCTGTACTGAAATGACCCGCCGTTATTTGTTTGCAGAA
TTAAAAGAGACCCACTGTTTTACCTCTCCCGACATTGTGAAAATGTATTTGCAGACGGAGCTGGCAAATACCGAGCGGGA
AATTTTTATGGTGCTTTTTCTGGATAATCAACATCGTTTGATTAAGCAGGAGCGCCTGTTTCTCGGCACCATTAATAAAG
CGATGGTGTATCCGCGCGAGATCATTAAAGAAGCCTTGGCTTGTAATGCGGCGGCGATTATTTTGGCGTATAATCACCCT
TCCGGCGTGGCGGAGCCGAGCATTTCCGATAAACAAATTACCGATACTATCAGGCAGGCGGCGGATTTGGTGGATATTCG
CGTGCTGGATCATTTCGTGATCGGCAATGGACGTTATTTTTCCTTTTCGGAACAAAATCTTCTTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-68)

RadC-like JAB domain (RadC)

(87-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

63.303

100

0.663

Multiple sequence alignment