Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | FXN59_RS10520 | Genome accession | NZ_CP043004 |
| Coordinates | 2023270..2024283 (-) | Length | 337 a.a. |
| NCBI ID | WP_151295071.1 | Uniprot ID | - |
| Organism | Aggregatibacter actinomycetemcomitans strain HK_973 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2018270..2029283
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FXN59_RS10490 (FXN59_10490) | ybgC | 2018815..2019219 (-) | 405 | WP_151294898.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| FXN59_RS10495 (FXN59_10495) | ybgE | 2019335..2019622 (-) | 288 | WP_148324943.1 | cyd operon protein YbgE | - |
| FXN59_RS10500 (FXN59_10500) | - | 2019627..2019725 (-) | 99 | WP_019518193.1 | cytochrome bd oxidase small subunit, CydX/CbdX family | - |
| FXN59_RS10505 (FXN59_10505) | cydB | 2019737..2020873 (-) | 1137 | WP_148327085.1 | cytochrome d ubiquinol oxidase subunit II | - |
| FXN59_RS10510 (FXN59_10510) | - | 2020888..2022453 (-) | 1566 | WP_148327084.1 | cytochrome ubiquinol oxidase subunit I | - |
| FXN59_RS10515 (FXN59_10515) | - | 2022905..2023216 (+) | 312 | WP_151294900.1 | DUF5339 domain-containing protein | - |
| FXN59_RS10520 (FXN59_10520) | ruvB | 2023270..2024283 (-) | 1014 | WP_151295071.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| FXN59_RS10525 (FXN59_10525) | ruvA | 2024298..2024912 (-) | 615 | WP_148327083.1 | Holliday junction branch migration protein RuvA | - |
| FXN59_RS10530 (FXN59_10530) | ruvC | 2024976..2025548 (-) | 573 | WP_148324928.1 | crossover junction endodeoxyribonuclease RuvC | - |
| FXN59_RS10535 (FXN59_10535) | - | 2025604..2026014 (-) | 411 | WP_005542301.1 | hypothetical protein | - |
| FXN59_RS10540 (FXN59_10540) | - | 2026026..2026766 (-) | 741 | WP_005542303.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| FXN59_RS10545 (FXN59_10545) | nudB | 2026800..2027246 (-) | 447 | WP_148324922.1 | dihydroneopterin triphosphate diphosphatase | - |
| FXN59_RS10550 (FXN59_10550) | - | 2027352..2028620 (-) | 1269 | WP_148327081.1 | NRAMP family divalent metal transporter | - |
Sequence
Protein
Download Length: 337 a.a. Molecular weight: 37419.01 Da Isoelectric Point: 4.7993
>NTDB_id=334170 FXN59_RS10520 WP_151295071.1 2023270..2024283(-) (ruvB) [Aggregatibacter actinomycetemcomitans strain HK_973]
MIEADRIISATAKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVLDLTSIVSRSAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG
MISEEIAKAALSMLDIDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEEVLEPYLIQQGFLQRTSRGRIA
TLTTYRHFGIEKITRED
MIEADRIISATAKLDEDVIDRAIRPKLLADYVGQPQVCEQMEIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVLDLTSIVSRSAVCLQLKINDTAAYEIARRSRGTPRIANRLLRRVRDYADVRNNG
MISEEIAKAALSMLDIDDAGFDYLDRKLLTAVLERFDGGPVGLDNLAAAIGEERDTIEEVLEPYLIQQGFLQRTSRGRIA
TLTTYRHFGIEKITRED
Nucleotide
Download Length: 1014 bp
>NTDB_id=334170 FXN59_RS10520 WP_151295071.1 2023270..2024283(-) (ruvB) [Aggregatibacter actinomycetemcomitans strain HK_973]
ATGATTGAAGCAGATAGAATTATCAGTGCGACGGCAAAATTAGACGAGGATGTTATCGATCGTGCTATTCGCCCGAAATT
GCTGGCGGATTATGTGGGGCAACCGCAGGTATGCGAGCAAATGGAGATTTTCATCAAGGCGGCAAAATTGCGTCAGGATG
CGTTGGATCATTTGTTGATTTTCGGTCCGCCGGGTTTGGGAAAAACCACCTTGGCAAATATTGTTGCCAATGAAATGGGC
GTAAATATTCGCACTACGTCAGGTCCCGTGCTGGAAAAGGCGGGGGATTTAGCGGCAATGTTGACCAATCTGGAGCCTCA
TGATGTGTTGTTTATTGATGAAATTCATCGTCTTTCTCCGGCGATTGAAGAAGTGCTTTATCCGGCAATGGAAGATTATC
AGCTTGATATTATGATTGGCGAAGGGCCGGCAGCGCGTTCTATTAAATTGGATTTGCCGCCTTTTACGCTTATCGGTGCA
ACCACCCGTGCGGGCTCTTTAACCTCTCCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTTTGGAATTTTATTCCGTGTT
GGATTTAACTTCTATTGTGTCCAGAAGTGCGGTCTGTTTACAGCTTAAAATTAACGATACAGCAGCTTATGAAATCGCCC
GCCGCTCTCGCGGCACGCCACGGATTGCCAATCGGTTATTACGTCGGGTGCGTGATTATGCTGATGTGCGTAACAATGGC
ATGATTAGTGAAGAGATTGCTAAAGCAGCGCTATCCATGCTGGATATTGATGATGCGGGGTTTGACTACTTAGACAGAAA
ATTGCTTACGGCAGTTTTGGAGCGCTTTGACGGTGGTCCGGTCGGTTTGGATAATTTGGCGGCGGCAATTGGGGAAGAGC
GGGATACCATTGAAGAAGTATTGGAACCATATTTGATTCAACAGGGTTTTTTACAGCGAACCTCAAGGGGGCGAATTGCT
ACACTCACCACATATCGCCATTTTGGTATTGAGAAAATTACTCGCGAAGATTAA
ATGATTGAAGCAGATAGAATTATCAGTGCGACGGCAAAATTAGACGAGGATGTTATCGATCGTGCTATTCGCCCGAAATT
GCTGGCGGATTATGTGGGGCAACCGCAGGTATGCGAGCAAATGGAGATTTTCATCAAGGCGGCAAAATTGCGTCAGGATG
CGTTGGATCATTTGTTGATTTTCGGTCCGCCGGGTTTGGGAAAAACCACCTTGGCAAATATTGTTGCCAATGAAATGGGC
GTAAATATTCGCACTACGTCAGGTCCCGTGCTGGAAAAGGCGGGGGATTTAGCGGCAATGTTGACCAATCTGGAGCCTCA
TGATGTGTTGTTTATTGATGAAATTCATCGTCTTTCTCCGGCGATTGAAGAAGTGCTTTATCCGGCAATGGAAGATTATC
AGCTTGATATTATGATTGGCGAAGGGCCGGCAGCGCGTTCTATTAAATTGGATTTGCCGCCTTTTACGCTTATCGGTGCA
ACCACCCGTGCGGGCTCTTTAACCTCTCCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTTTGGAATTTTATTCCGTGTT
GGATTTAACTTCTATTGTGTCCAGAAGTGCGGTCTGTTTACAGCTTAAAATTAACGATACAGCAGCTTATGAAATCGCCC
GCCGCTCTCGCGGCACGCCACGGATTGCCAATCGGTTATTACGTCGGGTGCGTGATTATGCTGATGTGCGTAACAATGGC
ATGATTAGTGAAGAGATTGCTAAAGCAGCGCTATCCATGCTGGATATTGATGATGCGGGGTTTGACTACTTAGACAGAAA
ATTGCTTACGGCAGTTTTGGAGCGCTTTGACGGTGGTCCGGTCGGTTTGGATAATTTGGCGGCGGCAATTGGGGAAGAGC
GGGATACCATTGAAGAAGTATTGGAACCATATTTGATTCAACAGGGTTTTTTACAGCGAACCTCAAGGGGGCGAATTGCT
ACACTCACCACATATCGCCATTTTGGTATTGAGAAAATTACTCGCGAAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
61.468 |
97.033 |
0.596 |
| ruvB | Streptococcus pneumoniae TIGR4 |
57.975 |
96.736 |
0.561 |
| ruvB | Streptococcus pneumoniae R6 |
57.975 |
96.736 |
0.561 |
| ruvB | Streptococcus pneumoniae D39 |
57.975 |
96.736 |
0.561 |
| ruvB | Helicobacter pylori 26695 |
55.34 |
91.691 |
0.507 |
| ruvB | Synechocystis sp. PCC 6803 |
55.34 |
91.691 |
0.507 |