Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   EP550_RS01695 Genome accession   NZ_CP035043
Coordinates   358071..358889 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain ABUH796     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353071..363889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP550_RS01660 (EP550_01660) - 353653..353783 (-) 131 Protein_315 hypothetical protein -
  EP550_RS01665 (EP550_01665) rpoZ 353822..354100 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  EP550_RS01670 (EP550_01670) gmk 354173..354802 (-) 630 WP_000015937.1 guanylate kinase -
  EP550_RS01675 (EP550_01675) ispH 354925..355875 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EP550_RS01680 (EP550_01680) fimU 356045..356518 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EP550_RS01685 (EP550_01685) pilV 356512..357072 (+) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  EP550_RS01690 (EP550_01690) pilW 357073..358074 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  EP550_RS01695 (EP550_01695) pilX 358071..358889 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EP550_RS01700 (EP550_01700) pilY1 358901..362755 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  EP550_RS01705 (EP550_01705) pilY2 362768..363250 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  EP550_RS01710 (EP550_01710) pilE 363247..363672 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=334114 EP550_RS01695 WP_000149374.1 358071..358889(+) (pilX) [Acinetobacter baumannii strain ABUH796]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=334114 EP550_RS01695 WP_000149374.1 358071..358889(+) (pilX) [Acinetobacter baumannii strain ABUH796]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment