Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FXN58_RS07160 Genome accession   NZ_CP043003
Coordinates   1356039..1358081 (+) Length   680 a.a.
NCBI ID   WP_148325171.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_907     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1351039..1363081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN58_RS07140 (FXN58_07135) ettA 1351667..1353337 (-) 1671 WP_148325165.1 energy-dependent translational throttle protein EttA -
  FXN58_RS07145 (FXN58_07140) zevA 1353716..1354381 (+) 666 WP_148325167.1 zinc transporter binding subunit ZevA -
  FXN58_RS07150 (FXN58_07145) zevB 1354396..1355427 (+) 1032 WP_148325169.1 zinc transporter permease subunit ZevB -
  FXN58_RS07160 (FXN58_07155) uvrB 1356039..1358081 (+) 2043 WP_148325171.1 excinuclease ABC subunit UvrB Machinery gene
  FXN58_RS07165 (FXN58_07160) ompA 1358308..1359378 (+) 1071 WP_148325173.1 porin OmpA -
  FXN58_RS07170 (FXN58_07165) - 1359569..1360951 (-) 1383 WP_148325175.1 Do family serine endopeptidase -
  FXN58_RS07175 (FXN58_07170) - 1361142..1361552 (-) 411 WP_005540203.1 YhcB family protein -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 77456.98 Da        Isoelectric Point: 5.2729

>NTDB_id=334115 FXN58_RS07160 WP_148325171.1 1356039..1358081(+) (uvrB) [Aggregatibacter actinomycetemcomitans strain HK_907]
MSEKINTKPFILHSHFKPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMVLAPNKTLAAQLYA
EMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYL
KMMLHLQQGAIINQRQILAKLAELQYTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDGEIERLSLFDPLTGSSF
GTVPRFTVYPKTHYVTPRERILDAIEKIKLELAQRREYFTKENKLLEEQRISQRTQFDIEMMNELGYCSGIENYSRYLSG
RNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSAT
PGPYELEKSGGEIIDQVVRPTGLLDPQIEIRPVSIQVDDLLSEARHRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRY
LHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYAD
NITKSMEKAITETNRRREKQAKYNEAQGIVPQALNKKVGELLDIGQGANQKAKANKQRGKTVAEPTALYTTPKSLKEYQQ
QIKKLEQQMYKFAQDLEFEKAAATRDQLQQLRESFMLSSE

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=334115 FXN58_RS07160 WP_148325171.1 1356039..1358081(+) (uvrB) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGTCAGAAAAAATTAACACTAAACCTTTTATTCTTCATTCCCATTTCAAACCCTCCGGCGACCAACCCCAGGCCATCGC
AAAATTAGCCGAAAATTTAGAAGATGGCTTGGCACATCAAACCTTGCTTGGGGTAACAGGTTCAGGCAAAACCTTTACCA
TTGCCAATGTGATTGCGCAATTGAATCGCCCTGCGATGGTGTTGGCACCGAACAAAACCCTTGCCGCCCAGCTTTATGCC
GAAATGAAGGATTTTTTCCCGGAAAATGCGGTGGAATATTTTGTTTCTTACTATGATTATTATCAGCCCGAAGCCTATGT
GCCGAGTAGCGATACTTTTATTGAGAAAGACGCGTCTATTAATGATCAAATTGAACAAATGCGACTTTCCGCCACAAAAT
CTTTCTTAGAACGGCGCGATACTATTGTAGTGGCGTCCGTGTCCGCTATTTATGGCTTAGGGGACCCCGATTCCTATTTA
AAAATGATGCTGCATTTGCAACAAGGCGCGATTATTAATCAGCGCCAAATCTTGGCAAAATTGGCAGAGTTGCAATATAC
CCGTAACGATCAGGCGTTTCAGCGCGGAACGTTCCGTGTGCGGGGAGAAATTATTGATATTTTCCCGGCGGAATCGGACG
ATCGAGCGGTACGTATCGAATTATTTGATGGTGAAATCGAACGCTTGAGTTTATTTGATCCGCTCACCGGCAGCAGCTTC
GGCACGGTGCCGCGCTTTACCGTTTATCCGAAAACCCACTATGTTACACCGCGTGAGCGAATTTTAGACGCCATCGAAAA
AATTAAACTGGAATTGGCGCAACGGCGGGAGTATTTCACTAAAGAAAATAAATTATTGGAAGAGCAGCGTATCAGCCAAC
GTACCCAATTTGATATTGAGATGATGAATGAACTCGGTTATTGCTCGGGCATTGAAAACTATTCCCGCTACTTATCAGGT
AGAAATGAGGGCGAACCGCCACCGACCTTATTTGATTATATGCCGTCTGACGCAATTTTGATTATTGACGAATCCCACGT
CACCGTGCCACAAATCGGTGGGATGTATCGCGGCGATCGCTCCCGTAAAGAAACCTTGGTGGAATATGGTTTTCGTCTGC
CTTCTGCGTTGGATAACCGTCCGTTACGTTTTGAAGAATTTGAACGTTTGGCACCGCAAACCATTTATGTTTCCGCCACA
CCGGGACCTTATGAATTGGAAAAATCCGGTGGGGAAATTATCGACCAAGTAGTGCGTCCGACAGGTTTGCTTGATCCGCA
AATTGAAATTCGCCCGGTATCTATTCAGGTGGATGATTTACTTTCCGAAGCACGCCATAGAGCGGATAAAAATGAACGCG
TTTTAGTGACGACATTAACGAAGAAAATGGCGGAAGATCTTACCGACTATTTAGATGAACATGGTATTCGCGTACGTTAT
TTGCATTCTGATATTGATACCGTCGAACGGGTGGAAATTATTCGTGATTTGCGCTTGGGGGAATTTGATGTTTTAGTCGG
CATTAACTTATTACGGGAAGGTTTAGATATTCCGGAAGTGTCTTTAGTGGCAATTTTAGATGCGGATAAAGAAGGTTTTT
TACGTTCCGAGCGTTCATTAATTCAAACGATCGGACGTGCTGCGCGAAATTTACACGGAAAAGCCATTTTGTATGCGGAT
AATATAACCAAATCAATGGAGAAAGCTATTACCGAAACCAATCGTCGGCGTGAGAAACAAGCAAAATATAATGAAGCACA
GGGCATTGTGCCGCAGGCATTAAATAAAAAGGTAGGCGAGTTGTTAGATATCGGTCAGGGTGCCAATCAGAAAGCCAAAG
CCAATAAACAACGTGGAAAAACGGTGGCAGAACCGACCGCACTTTATACAACGCCGAAATCACTGAAAGAATATCAGCAA
CAGATTAAGAAACTGGAGCAGCAAATGTATAAATTTGCACAGGATTTGGAATTTGAGAAAGCTGCTGCAACGCGCGATCA
GTTACAACAATTACGGGAAAGTTTTATGTTATCAAGTGAGTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(446-549)

UvrB/uvrC motif (UVR)

(640-673)

UvrB interaction domain (UvrB_inter)

(164-254)

Type III restriction enzyme, res subunit (ResIII)

(17-102)

Ultra-violet resistance protein B (UvrB)

(557-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.994

98.824

0.563
  uvrB Streptococcus pneumoniae R6

56.994

98.824

0.563
  uvrB Streptococcus pneumoniae D39

56.994

98.824

0.563

Multiple sequence alignment