Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FXN58_RS02890 Genome accession   NZ_CP043003
Coordinates   540953..541564 (-) Length   203 a.a.
NCBI ID   WP_392388679.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_907     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 535953..546564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN58_RS02880 (FXN58_02875) - 538510..539355 (+) 846 WP_148323795.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  FXN58_RS02885 (FXN58_02880) gorA 539450..540820 (+) 1371 WP_148323797.1 glutathione-disulfide reductase -
  FXN58_RS02890 (FXN58_02885) crp 540953..541564 (-) 612 WP_392388679.1 cAMP-activated global transcriptional regulator CRP Regulator
  FXN58_RS02895 (FXN58_02890) - 541635..541853 (-) 219 WP_005540236.1 YheU family protein -
  FXN58_RS02900 (FXN58_02895) slmA 541877..542476 (-) 600 WP_005540234.1 nucleoid occlusion factor SlmA -
  FXN58_RS02905 (FXN58_02900) dut 542476..542931 (-) 456 WP_148323801.1 dUTP diphosphatase -
  FXN58_RS02910 (FXN58_02905) coaBC 543000..544199 (-) 1200 WP_148323803.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  FXN58_RS02915 (FXN58_02910) radC 544377..545036 (+) 660 WP_005562038.1 DNA repair protein RadC Machinery gene
  FXN58_RS02920 (FXN58_02915) rpmB 545244..545480 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  FXN58_RS02925 (FXN58_02920) rpmG 545492..545662 (+) 171 WP_005544948.1 50S ribosomal protein L33 -
  FXN58_RS02930 (FXN58_02925) mutM 545745..546560 (+) 816 WP_148323805.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23044.61 Da        Isoelectric Point: 7.8328

>NTDB_id=334096 FXN58_RS02890 WP_392388679.1 540953..541564(-) (crp) [Aggregatibacter actinomycetemcomitans strain HK_907]
MDPTLEWFLSHCHIHKYPSKSTLINASEKAETLYYLIQGSVSVLVKDEDGKEMILTYLSQGDFFGEAGLFEEGQRRSAWI
KAKSSCEVAEISYRKFRQLIQVNPEILMYLTAQLAYRLQNTSRQVSNLAFLDVTGRIAQTLLNLAKMPEAMTHPDGMQIK
ITRQEIGQMVGCSRETVGRILKMLEDQHLISAHGKTIVVYGTR

Nucleotide


Download         Length: 612 bp        

>NTDB_id=334096 FXN58_RS02890 WP_392388679.1 540953..541564(-) (crp) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGGATCCGACACTTGAGTGGTTTTTATCCCACTGCCATATCCATAAATATCCGTCTAAAAGCACATTAATCAACGCCAG
CGAAAAAGCCGAGACACTTTATTATTTAATTCAAGGCTCCGTGTCCGTTTTGGTCAAAGACGAAGACGGCAAAGAAATGA
TCCTCACCTATTTAAGCCAAGGGGATTTTTTCGGCGAAGCGGGCTTATTTGAAGAAGGACAACGTCGTTCTGCGTGGATT
AAAGCAAAATCCTCCTGTGAAGTGGCGGAAATTTCTTATCGTAAATTTCGCCAGCTGATTCAAGTCAACCCTGAGATTCT
GATGTATCTTACGGCCCAATTAGCGTATCGGTTACAAAACACTTCGCGCCAAGTAAGTAATTTAGCCTTTTTAGATGTCA
CCGGTCGCATTGCGCAAACCTTGCTCAATCTGGCAAAAATGCCGGAAGCGATGACTCACCCGGACGGTATGCAAATTAAA
ATCACCCGCCAGGAAATCGGACAAATGGTCGGTTGTTCGCGGGAAACCGTCGGGCGTATTCTGAAAATGCTGGAAGATCA
ACACCTCATCTCGGCACACGGCAAAACCATCGTAGTTTACGGCACCCGCTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(16-102)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(135-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

81.683

99.507

0.813
  crp Haemophilus influenzae Rd KW20

80.198

99.507

0.798
  crp Acinetobacter baumannii D1279779

46.734

98.03

0.458