Detailed information NTG0334097

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: FXN58_RS02915
• Genome accession: NZ_CP043003
• Coordinates: 544377..545036 (+)
• Length: 219 a.a.
• NCBI ID: WP_005562038.1
• Uniprot ID: -
• Organism: Aggregatibacter actinomycetemcomitans strain HK_907
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 539377..550036

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FXN58_RS02885 (FXN58_02880)	gorA	539450..540820 (+)	1371	WP_148323797.1	glutathione-disulfide reductase	-
FXN58_RS02890 (FXN58_02885)	crp	540953..541564 (-)	612	WP_392388679.1	cAMP-activated global transcriptional regulator CRP	Regulator
FXN58_RS02895 (FXN58_02890)	-	541635..541853 (-)	219	WP_005540236.1	YheU family protein	-
FXN58_RS02900 (FXN58_02895)	slmA	541877..542476 (-)	600	WP_005540234.1	nucleoid occlusion factor SlmA	-
FXN58_RS02905 (FXN58_02900)	dut	542476..542931 (-)	456	WP_148323801.1	dUTP diphosphatase	-
FXN58_RS02910 (FXN58_02905)	coaBC	543000..544199 (-)	1200	WP_148323803.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
FXN58_RS02915 (FXN58_02910)	radC	544377..545036 (+)	660	WP_005562038.1	DNA repair protein RadC	Machinery gene
FXN58_RS02920 (FXN58_02915)	rpmB	545244..545480 (+)	237	WP_005542826.1	50S ribosomal protein L28	-
FXN58_RS02925 (FXN58_02920)	rpmG	545492..545662 (+)	171	WP_005544948.1	50S ribosomal protein L33	-
FXN58_RS02930 (FXN58_02925)	mutM	545745..546560 (+)	816	WP_148323805.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
FXN58_RS02935 (FXN58_02930)	-	546563..547615 (-)	1053	WP_148323807.1	glycosyltransferase family 9 protein	-
FXN58_RS02940 (FXN58_02935)	-	547625..548647 (-)	1023	WP_148323809.1	glycosyltransferase family 9 protein	-
FXN58_RS02945 (FXN58_02940)	-	548648..549340 (-)	693	WP_148325816.1	glycosyltransferase family 25 protein	-
FXN58_RS02950 (FXN58_02945)	rpmE	549403..549615 (-)	213	WP_005542845.1	50S ribosomal protein L31	-

Sequence

Protein

• Length: 219 a.a.
• Molecular weight: 24901.00 Da
• Isoelectric Point: 6.9423

>NTDB_id=334097 FXN58_RS02915 WP_005562038.1 544377..545036(+) (radC) [Aggregatibacter actinomycetemcomitans strain HK_907]
MNEALMPREKLLKYGAAALTDDELLAIFLRTGIKDCPVMQLSKNVLQHFGSLRELISANQKQFCAVKGIGITQFIQLQAC
TEMTRRYLFAELKETHCFTSPDIVKMYLQTELANTEREIFMVLFLDNQHRLIKQERLFLGTINKAMVYPREIIKEALACN
AAAIILAYNHPSGVAEPSISDKQITDTIRQAADLVDIRVLDHFVIGNGRYFSFSEQNLL

Nucleotide

• Length: 660 bp

>NTDB_id=334097 FXN58_RS02915 WP_005562038.1 544377..545036(+) (radC) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGAATGAAGCATTAATGCCAAGGGAAAAGCTATTAAAATACGGTGCTGCCGCTTTGACGGACGATGAACTATTGGCGAT
CTTTTTGCGTACGGGAATTAAGGACTGCCCGGTGATGCAGTTATCGAAAAATGTGCTACAACATTTCGGTTCGTTACGTG
AATTGATTAGCGCCAATCAAAAGCAGTTTTGCGCCGTGAAAGGCATTGGTATTACGCAGTTTATTCAGCTGCAAGCCTGT
ACTGAAATGACCCGCCGTTATTTGTTTGCAGAATTAAAAGAGACCCACTGTTTTACCTCTCCCGACATTGTGAAAATGTA
TTTGCAGACGGAGCTGGCAAATACCGAGCGGGAAATTTTTATGGTGCTTTTTCTGGATAATCAACATCGTTTGATTAAGC
AGGAGCGCCTGTTTCTCGGCACCATTAATAAAGCGATGGTGTATCCGCGCGAGATCATTAAAGAAGCCTTGGCTTGTAAT
GCGGCGGCGATTATTTTGGCGTATAATCACCCTTCCGGCGTGGCGGAGCCGAGCATTTCCGATAAACAAATTACCGATAC
TATCAGGCAGGCGGCGGATTTGGTGGATATTCGCGTGCTGGATCATTTCGTGATCGGCAATGGACGTTATTTTTCCTTTT
CGGAACAAAATCTTCTTTAA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-72)

• RadC-like JAB domain (RadC) (98-217)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	66.972	99.543	0.667