Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EPK90_RS04445 Genome accession   NZ_CP035034
Coordinates   898436..898990 (-) Length   184 a.a.
NCBI ID   WP_128391813.1    Uniprot ID   -
Organism   Pantoea ananatis strain NN08200     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 893436..903990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPK90_RS04420 (EPK90_04420) - 894789..895541 (+) 753 WP_128391809.1 hypothetical protein -
  EPK90_RS04425 (EPK90_04425) - 896423..896659 (-) 237 WP_128391810.1 DUF2442 domain-containing protein -
  EPK90_RS24880 - 896825..897172 (+) 348 WP_240678541.1 FxLYD domain-containing protein -
  EPK90_RS04435 (EPK90_04435) - 897290..897721 (-) 432 WP_128391811.1 DUF29 domain-containing protein -
  EPK90_RS04440 (EPK90_04440) - 897847..898278 (-) 432 WP_128391812.1 DUF29 domain-containing protein -
  EPK90_RS04445 (EPK90_04445) ssb 898436..898990 (-) 555 WP_128391813.1 single-stranded DNA-binding protein Machinery gene
  EPK90_RS04450 (EPK90_04450) - 899066..899575 (-) 510 WP_014606858.1 STY4534 family ICE replication protein -
  EPK90_RS04455 (EPK90_04455) - 900207..902225 (-) 2019 WP_128391814.1 DNA topoisomerase III -
  EPK90_RS04460 (EPK90_04460) - 902237..902959 (-) 723 WP_128391815.1 TIGR03761 family integrating conjugative element protein -
  EPK90_RS24885 - 903038..903172 (-) 135 Protein_860 hypothetical protein -
  EPK90_RS04470 (EPK90_04470) tnpA 903194..903664 (-) 471 WP_104933049.1 IS66-like element accessory protein TnpA -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20275.55 Da        Isoelectric Point: 7.1659

>NTDB_id=334054 EPK90_RS04445 WP_128391813.1 898436..898990(-) (ssb) [Pantoea ananatis strain NN08200]
MSARGVNKVILVGNLGQDPEVRYMPNGTAVTSLSLATSETWRDKQTGENREKTEWHRVVLFGKLAEIAGEYLRKGSQVYI
EGKLRTREWQDSEGTKRYTTEIVVDVNGTMQMLGGAKNSTNTSGNNKPSSQQDGWGKPQQPQPSQAQQSAPSNPANEPPM
DFDDDIPFLGHGYGVCRKAIYAIS

Nucleotide


Download         Length: 555 bp        

>NTDB_id=334054 EPK90_RS04445 WP_128391813.1 898436..898990(-) (ssb) [Pantoea ananatis strain NN08200]
ATGTCCGCACGCGGCGTCAACAAAGTTATCCTGGTCGGCAATCTCGGTCAGGACCCCGAAGTTCGTTACATGCCAAACGG
AACTGCAGTGACTAGTCTTTCTCTGGCCACCTCAGAAACCTGGCGTGACAAACAGACCGGTGAAAACCGGGAAAAAACCG
AATGGCATCGCGTCGTGCTGTTTGGAAAGCTGGCTGAAATAGCCGGTGAATACCTGCGTAAGGGTTCACAGGTTTATATC
GAAGGCAAACTCAGAACACGTGAATGGCAGGATAGCGAAGGTACTAAACGCTATACGACCGAAATCGTGGTTGATGTAAA
CGGAACGATGCAGATGCTGGGCGGGGCTAAAAACAGCACTAACACCAGTGGAAACAATAAGCCGTCAAGCCAGCAAGATG
GATGGGGTAAGCCACAACAGCCTCAGCCTTCTCAGGCACAACAGTCGGCTCCGAGTAATCCGGCGAACGAGCCGCCAATG
GACTTTGACGATGACATACCGTTCCTCGGACACGGTTATGGCGTCTGTCGTAAGGCCATTTACGCAATTTCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.854

96.739

0.647
  ssb Glaesserella parasuis strain SC1401

54.301

100

0.549
  ssb Neisseria meningitidis MC58

45.055

98.913

0.446
  ssb Neisseria gonorrhoeae MS11

45.198

96.196

0.435

Multiple sequence alignment