Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FRD49_RS01130 Genome accession   NZ_CP042994
Coordinates   248982..249557 (+) Length   191 a.a.
NCBI ID   WP_029776704.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain J1A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 243982..254557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD49_RS01115 (FRD49_01115) - 247133..247873 (+) 741 WP_148356567.1 M48 family metallopeptidase -
  FRD49_RS01120 (FRD49_01120) - 247919..248137 (-) 219 WP_002059957.1 helix-turn-helix domain-containing protein -
  FRD49_RS01125 (FRD49_01125) - 248211..248693 (+) 483 WP_068541454.1 hypothetical protein -
  FRD49_RS01130 (FRD49_01130) ssb 248982..249557 (+) 576 WP_029776704.1 single-stranded DNA-binding protein Machinery gene
  FRD49_RS01135 (FRD49_01135) - 249598..249921 (-) 324 WP_006580853.1 AzlD domain-containing protein -
  FRD49_RS01140 (FRD49_01140) - 249918..250613 (-) 696 WP_004884865.1 AzlC family ABC transporter permease -
  FRD49_RS01145 (FRD49_01145) - 250682..251230 (+) 549 WP_006582483.1 helix-turn-helix domain-containing protein -
  FRD49_RS01150 (FRD49_01150) - 251536..252978 (+) 1443 WP_032011888.1 amino acid permease -
  FRD49_RS01155 (FRD49_01155) - 253038..254537 (-) 1500 WP_002052153.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20655.36 Da        Isoelectric Point: 5.2494

>NTDB_id=333947 FRD49_RS01130 WP_029776704.1 248982..249557(+) (ssb) [Acinetobacter nosocomialis strain J1A]
MSNVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEGSLR
TRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGGYGGQGGFGN
GGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=333947 FRD49_RS01130 WP_029776704.1 248982..249557(+) (ssb) [Acinetobacter nosocomialis strain J1A]
ATGAGCAATGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTCGTTAACCCA
GTTTTCAATCGCGACAAGTGAAGTTTGGACCGATAAAACGTCAGGTGAACGTAAAGAACAAACAGAATGGCACCGTATTG
TTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGTTCATTACGT
ACGCGTCAGTGGACAGACCAAAATGGTCAGGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAATGTTAGATGC
TCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAATGCACCTCAACAAGGTGGCG
GTTATCAAAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTGGCCAAGGTGGTTTCGGTAAT
GGTGGTAACAGCCCGCAAGGTGGTGGTTTTGCTCCTAAAGCGCCGCAACAACCAGCATCTGCACCAGCTGATTTAGACGA
CGATTTACCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(1-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.99

100

0.508
  ssb Vibrio cholerae strain A1552

41.414

100

0.429
  ssb Neisseria meningitidis MC58

36.735

100

0.377
  ssb Neisseria gonorrhoeae MS11

36.735

100

0.377